Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11750 207 / 4e-67 Ribosomal protein L19 family protein (.1) AT4G11630 205 / 1e-66 Ribosomal protein L19 family protein (.1) AT1G24240 182 / 1e-57 Ribosomal protein L19 family protein (.1) AT5G47190 125 / 2e-35 Ribosomal protein L19 family protein (.1) AT4G17560 124 / 5e-35 Ribosomal protein L19 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017958 [exp] 345 / 2e-120 AT4G11630 155 / 3e-46 Ribosomal protein L19 family protein (.1) Lus10023720 [exp] 121 / 2e-33 AT4G17560 224 / 3e-74 Ribosomal protein L19 family protein (.1) Lus10014467 [exp] 121 / 2e-33 AT4G17560 223 / 9e-74 Ribosomal protein L19 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086800 [exp] 203 / 1e-65 AT4G11630 204 / 4e-66 Ribosomal protein L19 family protein (.1) Potri.001G152200 [exp] 127 / 8e-36 AT4G17560 177 / 1e-55 Ribosomal protein L19 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0107 [flax] [poplar] KOW PF01245 [flax] [poplar] Ribosomal_L19 Ribosomal protein L19
Representative CDS sequence Show only first row Show all	>Lus10041948 pacid=23153852 polypeptide=Lus10041948 locus=Lus10041948.g ID=Lus10041948.BGIv1.0 annot-version=v1.0 ATGCGGTCTCTTTTCGGCGGACTGATTGGAAGGCATAAGATCAGCTGTTCGAGTACTTCCCGCTGGCAGTCAACCGCAACTTCCATCGCTAACTTCAGCA ATGAACGTATTCTTTCCCGTTCATCGCCTCCAAACCATCTCTTCCTCCGGTCGTTTCACCATTTCGCTTCCGGATCTCCTTTGTCAACGACCTCAGAAGT TGAAAGAACCGGCTTGACCAGGTTTAGAAGCAACATGATAAGCTCTAGTCTTAATCGTCTAGGAACTTCTTTCCCTATCAGGAACATAACAACATCGGGA GCTCCTGCTGCACCAGCTTCGGATGATTCTTCGATACCTTCGGATGTTGTACCCCCACGAATCAAATTCAAGAGGATGGATAAGATGGCAAGGAACATTA TGCAGATTCTCAATCGAGAAGCAGTAGGGGAAGTGAGGACACAAAGGGAAATACCTGATATACAGCCTGGTTATATTGTGCAACTCAAAGTGGAAGTGCC TGAAAATAAGAGGCGGCTTTCAACTGTGAAGGGTATTGTTATAGCAAGGCGTAATGCTGGCATAAATTCGACGTTTAGAATAAGAAGACAAGTTGCAGGG GTTGGAGTTGAATCTCTCTTCATGCTATACTCACCTAACATAAAGGAGGTGAAGGTGTTGGATAAGAAGAAAGTCAGAAGGGCCAAGCTTTACTATCTGA GAGAAAAGATGAACGCCCTTTCGAAATAG
AA sequence Show only first row Show all	>Lus10041948 pacid=23153852 polypeptide=Lus10041948 locus=Lus10041948.g ID=Lus10041948.BGIv1.0 annot-version=v1.0 MRSLFGGLIGRHKISCSSTSRWQSTATSIANFSNERILSRSSPPNHLFLRSFHHFASGSPLSTTSEVERTGLTRFRSNMISSSLNRLGTSFPIRNITTSG APAAPASDDSSIPSDVVPPRIKFKRMDKMARNIMQILNREAVGEVRTQREIPDIQPGYIVQLKVEVPENKRRLSTVKGIVIARRNAGINSTFRIRRQVAG VGVESLFMLYSPNIKEVKVLDKKKVRRAKLYYLREKMNALSK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G11630			Ribosomal protein L19 family p...		Lus10041948 [exp]	0	1
AT4G01100		ADNT1	adenine nucleotide transporter...		Lus10032364 [exp]	5.1	0.7041
AT5G27700			Ribosomal protein S21e (.1)		Lus10020645 [exp]	5.2	0.7908
AT5G41190			unknown protein		Lus10008488 [exp]	8.0	0.7821
AT3G01160			unknown protein		Lus10041866 [exp]	8.5	0.7674
AT1G24510			TCP-1/cpn60 chaperonin family ...		Lus10036947 [exp]	9.2	0.7419
AT4G21705			Tetratricopeptide repeat (TPR)...		Lus10001213 [exp]	10.4	0.7597
AT1G05600		EMB3101	EMBRYO DEFECTIVE 3101, Tetratr...		Lus10030200 [exp]	12.0	0.7578
AT5G24840			tRNA (guanine-N-7) methyltrans...		Lus10020164 [exp]	15.5	0.7586
AT1G61870		PPR336	pentatricopeptide repeat 336 (...		Lus10006769 [exp]	18.7	0.7487
AT5G65260			RNA-binding (RRM/RBD/RNP motif...		Lus10043008 [exp]	21.0	0.6795

Compare expression of checked genes

Lus10041948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.