Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50200 174 / 5e-55 WR3, ATNRT3.1, NRT3.1 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) AT4G24730 171 / 1e-53 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017960 [exp] 247 / 2e-84 AT4G24730 96 / 5e-25 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085000 [exp] 230 / 5e-77 AT5G50200 184 / 5e-59 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Potri.015G085100 [exp] 229 / 1e-76 AT5G50200 182 / 3e-58 WOUND-RESPONSIVE 3, NITRATE TRANSPORTER 3.1, nitrate transmembrane transporters (.1.2.3) Potri.012G089300 [exp] 229 / 2e-76 AT4G24730 177 / 6e-56 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2.3.4)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041950 pacid=23153460 polypeptide=Lus10041950 locus=Lus10041950.g ID=Lus10041950.BGIv1.0 annot-version=v1.0 ATGGCAGCTCCGACGGCGGCGCGTCCAGTCTTCCTCCTCTTAGCTTCAACCGTCGTTGTATTCTCTTGCTTGGTTTCCTTCTCCGACGCCAATGAGCTCT TCTCGACCCTCCAGCAGAGCCTCTTCGTCACTGCCTCCCCTGCTTCCGGCCAAGTTTTGAAGGGAGGAGAGGACAAGATCAAGGTGACGTGGGGATTCAA CAAGACCTCGCTGGCGGCGGCGGCTGACGGCGACAGCAAGTTCAAGAACATCAAAGTAAAGCTCTGCTACGCGCCGGTGAGCCAGAAGGACAGGCCGTGG AGGAAGACGGTGGACCACTTAAACAAGGACAAGACCTGCCAGTTCAAAATCGTGGCCAGGCCTTATTCCGCCGGCGGCAACCAGAACAGCGTCGAGTGGA CGGTGGAGAGAGACGTGCCTACGGCGACGTACTTCGTACGCGCCTATGCACTGGACGCCGCGGGTAAGCAAGTGGCGTACGGGCAGACGACGAACGCCCA GAAGACGACCAACTTGTTCAAAGTGGAGGCGGTGAGCGGCCGCCACGCGACTCTGGACATCGTCTCCGTTTGTTTCAGTGTTTTCTCGGTCGTGTCGCTG TTTGGATTCTTCTACAACGAGAAGCGCAAGGGGAAGTCGGCCAAGTGA
AA sequence Show only first row Show all	>Lus10041950 pacid=23153460 polypeptide=Lus10041950 locus=Lus10041950.g ID=Lus10041950.BGIv1.0 annot-version=v1.0 MAAPTAARPVFLLLASTVVVFSCLVSFSDANELFSTLQQSLFVTASPASGQVLKGGEDKIKVTWGFNKTSLAAAADGDSKFKNIKVKLCYAPVSQKDRPW RKTVDHLNKDKTCQFKIVARPYSAGGNQNSVEWTVERDVPTATYFVRAYALDAAGKQVAYGQTTNAQKTTNLFKVEAVSGRHATLDIVSVCFSVFSVVSL FGFFYNEKRKGKSAK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50200		WR3, ATNRT3.1, ...	WOUND-RESPONSIVE 3, NITRATE TR...		Lus10041950 [exp]	0	1
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Lus10021395 [exp]	1.0	0.9049
					Lus10019690 [exp]	4.9	0.8944
					Lus10019691 [exp]	7.1	0.8737
AT1G24530			Transducin/WD40 repeat-like su...		Lus10036881 [exp]	17.3	0.9008
AT2G34830	WRKY	ATWRKY35, WRKY3...	maternal effect embryo arrest ...		Lus10038426 [exp]	18.9	0.8952
AT1G72230			Cupredoxin superfamily protein...		Lus10025580 [exp]	19.7	0.8919
AT1G33590			Leucine-rich repeat (LRR) fami...		Lus10041064 [exp]	25.3	0.8872
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10036725 [exp]	26.7	0.8906
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	26.9	0.8630
AT5G17010			Major facilitator superfamily ...		Lus10009573 [exp]	31.6	0.8877

Compare expression of checked genes

Lus10041950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.