Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48280 480 / 1e-166 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48270 463 / 1e-159 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48310 455 / 2e-156 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT3G48290 447 / 2e-153 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT3G48300 438 / 5e-150 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT3G48320 437 / 1e-149 CYP71A21 "cytochrome P450, family 71, subfamily A, polypeptide 21", cytochrome P450, family 71, subfamily A, polypeptide 21 (.1) AT4G13310 428 / 8e-146 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT4G13290 414 / 2e-140 CYP71A19 "cytochrome P450, family 71, subfamily A, polypeptide 19", cytochrome P450, family 71, subfamily A, polypeptide 19 (.1) AT2G30770 399 / 2e-134 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT1G11610 395 / 4e-133 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017961 [exp] 908 / 0 AT3G48280 502 / 4e-175 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10019457 [exp] 575 / 0 AT3G48280 467 / 2e-161 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10043308 [exp] 569 / 0 AT3G48280 463 / 5e-160 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Lus10030924 [exp] 402 / 2e-135 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10029035 [exp] 399 / 6e-134 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10016601 [exp] 397 / 1e-133 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10034230 [exp] 397 / 2e-133 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10012879 [exp] 394 / 6e-132 AT3G26330 409 / 6e-138 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10019459 [exp] 390 / 1e-130 AT2G30770 409 / 3e-138 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G085800 [exp] 615 / 0 AT3G48270 479 / 7e-166 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.015G086000 [exp] 462 / 6e-159 AT1G13080 434 / 2e-148 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) Potri.012G090000 [exp] 460 / 3e-158 AT3G26330 433 / 5e-148 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Potri.012G089900 [exp] 457 / 4e-157 AT3G48280 429 / 1e-146 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.016G137600 [exp] 420 / 2e-142 AT3G48270 401 / 2e-135 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) Potri.002G025800 [exp] 416 / 4e-141 AT4G31500 490 / 3e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G026500 [exp] 415 / 2e-140 AT4G31500 489 / 8e-170 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025500 [exp] 409 / 2e-138 AT4G31500 502 / 6e-175 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025425 [exp] 402 / 1e-135 AT4G31500 520 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1) Potri.002G025300 [exp] 399 / 1e-134 AT4G31500 519 / 0.0 SUPERROOT 2, RUNT 1, RED ELONGATED 1, "cytochrome P450, family 83, subfamily B, polypeptide 1", ALTERED TRYPTOPHAN REGULATION 4, cytochrome P450, family 83, subfamily B, polypeptide 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [flax] [poplar] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Lus10041951 pacid=23153675 polypeptide=Lus10041951 locus=Lus10041951.g ID=Lus10041951.BGIv1.0 annot-version=v1.0 ATGACAGACCAAACTCTACTCCTCCCACGAGAATTCTCCATCTCCAACCCTCTGCATCTCCTTCTTCTCCTTATCCTCCCACTACTCATCATCACCGCCA AATGGCTCTTCAACTCCTCCAAATCAACCACCAAAAACCTCCCACCATCTCCACCAAAGCTCCCAATCCTTGGAAACCTCCATCAACTAGGCACCCATCC ACACCGCACCCTCCAATCCTTGGCCAGAAAACACGGCCCAGTCATGCTCCTCCATCTCGGATCTTCCCCGACTCTAGTAGTTTCTTCGTCCGATTCGGCC CGAGAGATCATGAAGACCCACGACTTGCTCTTCGCCAACCGGCCTTACTCGAGCATCCAGAACCGCCTCCTCTACAACTACAAGGACCTCTCTCAAGCTC CCTACGGGGAGTACTGGAGGCAGATGCGCAGCATCTGCGTCCTCCGGTTGCTCAGCCCGAAACGGGTCGAGTCTTTCCGACCCATCAGGGAACAGGAGGC CAAACTTCTGGTTAAAAAAATTGAGGGCTTGTCCAAAACGACGTCGTCTAGTGGGTTCGACTTGGGGGAGATGTTGGCTGCGTTGACTAATGACGTCGTT TGTAGAGTGGCGTTCGGGAGGAAGTACGGAGAAGGGGATAAGGGGAAGGAGTTTAAGAAGCTGTTGGAGGATTTTGGTACGGCTTTGGGGACTGTGAATG TGGCCGATTTTATTCCGTGGCTCGGTTGGGTTAACCGGTTCAACGGTGTTAATGAGATGGTTGAGAGGGTGTTTTGGGGATTTGATAAGTTTTTGGATGA AGTTGTGGAGGATCATAAGGGTAGGGTTGAATTGGTTGAAGGGATGAGTGAAGATGAGATGGATTTGGTCGATGTTCTGCTTCGGATACAGAGGGAGTCG TCCCCTGATTCCTCCATTGATGGTGAAACCGTCAAAGCAATCGTTTTGGACATGTTTGCGGCAGGATCGGACACGTCATACACGGCGCTGGAATGGACAA TGACGGAAATCCTGAAGAACCCAGGAGTAATGAAGAAGCTCCAGCAGGAAATCCGAACGATTACAGGGAACGAGCGGAACGTAAATGAGGATGACGTCAA GCAAATGCCATACCTGAAAGCAGTCCTGAAGGAATCCTTCAGACTACACTCGCCGATCCCGCTCTTGGTGCCGCGAGAATCGACCCAGGACGTGACGGTA CAAGGGTACGACGTTCCGGCCAGGACGAGGGTGATCATCAACGCGTGGGCGATTGCTAGGGATCCGAAGAACTGGGAAGAGCCGGAGGAGTTTCGCCCCG AGAGGTTTCTGGACAGCTCGATTGATTATAAGGGTCAGGATTTTGAGCTGATTCCGTTTGGAGCCGGGAGGAGAGGGTGTCCAGGGGTTAGTTTTGCTAT CGCGTCGATTGAGATCACGTTGGCTAGCTTGTTGCACAGGTTTGATTGGTCGTTGCCCGGCGGGAAGAAGGCGGAGGATTTAGATACAGACGAAGCTCCG GGATTGGCGGTTCATCGGAAGACGCCTTTGGTTGTCGTTGCTACACCGTGGATTATGTAA
AA sequence Show only first row Show all	>Lus10041951 pacid=23153675 polypeptide=Lus10041951 locus=Lus10041951.g ID=Lus10041951.BGIv1.0 annot-version=v1.0 MTDQTLLLPREFSISNPLHLLLLLILPLLIITAKWLFNSSKSTTKNLPPSPPKLPILGNLHQLGTHPHRTLQSLARKHGPVMLLHLGSSPTLVVSSSDSA REIMKTHDLLFANRPYSSIQNRLLYNYKDLSQAPYGEYWRQMRSICVLRLLSPKRVESFRPIREQEAKLLVKKIEGLSKTTSSSGFDLGEMLAALTNDVV CRVAFGRKYGEGDKGKEFKKLLEDFGTALGTVNVADFIPWLGWVNRFNGVNEMVERVFWGFDKFLDEVVEDHKGRVELVEGMSEDEMDLVDVLLRIQRES SPDSSIDGETVKAIVLDMFAAGSDTSYTALEWTMTEILKNPGVMKKLQQEIRTITGNERNVNEDDVKQMPYLKAVLKESFRLHSPIPLLVPRESTQDVTV QGYDVPARTRVIINAWAIARDPKNWEEPEEFRPERFLDSSIDYKGQDFELIPFGAGRRGCPGVSFAIASIEITLASLLHRFDWSLPGGKKAEDLDTDEAP GLAVHRKTPLVVVATPWIM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Lus10041951 [exp]	0	1
					Lus10009731 [exp]	2.4	0.9691
AT5G55690	MADS		MADS-box transcription factor ...		Lus10007371 [exp]	4.9	0.9436
AT2G23770			protein kinase family protein ...		Lus10018788 [exp]	5.1	0.9678
					Lus10019232 [exp]	11.0	0.9630
AT1G09155		ATPP2-B15	phloem protein 2-B15 (.1)		Lus10015209 [exp]	12.7	0.9452
AT1G14550			Peroxidase superfamily protein...		Lus10024207 [exp]	13.3	0.9443
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Lus10019915 [exp]	13.7	0.9469
AT1G55230			Family of unknown function (DU...		Lus10013749 [exp]	13.8	0.9602
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	14.0	0.9656
AT1G14550			Peroxidase superfamily protein...		Lus10024205 [exp]	15.7	0.9567

Compare expression of checked genes

Lus10041951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.