Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31880 721 / 0 SOBIR1, EVR SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) AT5G62710 245 / 8e-73 Leucine-rich repeat protein kinase family protein (.1) AT1G09970 245 / 3e-70 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G31420 232 / 6e-68 FEI1 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) AT5G07280 238 / 2e-67 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G63930 237 / 4e-67 Leucine-rich repeat protein kinase family protein (.1) AT5G49660 234 / 2e-66 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 234 / 1e-65 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT4G28650 228 / 4e-64 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G61480 228 / 5e-64 PXY, TDR TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017963 [exp] 1122 / 0 AT2G31880 745 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10013675 [exp] 846 / 0 AT2G31880 781 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10033041 [exp] 843 / 0 AT2G31880 783 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Lus10036672 [exp] 240 / 6e-71 AT5G62710 936 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 240 / 3e-70 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10000509 [exp] 244 / 1e-69 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10015484 [exp] 238 / 1e-69 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033104 [exp] 236 / 1e-69 AT5G62710 934 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007233 [exp] 243 / 2e-69 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G090500 [exp] 778 / 0 AT2G31880 784 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.015G086800 [exp] 775 / 0 AT2G31880 804 / 0.0 SUPPRESSOR OF BIR1 1, EVERSHED, Leucine-rich repeat protein kinase family protein (.1) Potri.001G129000 [exp] 244 / 1e-72 AT1G31420 928 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.011G058100 [exp] 244 / 5e-70 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.003G105000 [exp] 235 / 3e-69 AT1G31420 893 / 0.0 FEI 1, Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G141200 [exp] 243 / 7e-69 AT5G07280 1347 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Potri.002G256500 [exp] 241 / 7e-69 AT4G28650 1339 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.002G111700 [exp] 240 / 2e-68 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.004G049100 [exp] 240 / 2e-68 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.003G163300 [exp] 226 / 7e-68 AT5G13290 484 / 3e-171 SUPPRESSOR OF LLP1 2, CORYNE, Protein kinase superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10041953 pacid=23153730 polypeptide=Lus10041953 locus=Lus10041953.g ID=Lus10041953.BGIv1.0 annot-version=v1.0 ATGGCCGTCTCCCACAAACCACTCCTCCTCCTCCTCATCGTCATCATCTCCCTTCTCCTCAACGTCCACGCCCGCCTCCTCCACCTCAACCCGTCAGATC ACCGCGCCCTCTCCGCCGTCCGCCGCAACCTCGGATTCAACCCCGTCGTCGTCTCTCCCTGCACTCTCCCCGGCGTTTTCTGCCAGCGCCGCGGCCTCTC CTCCACCGGGTACGAGCTCAGAGTCACCAGACTAGTCTTTAACTCCCAATCCCTCTCCGGAACTCTATCTCCCGAAATCAGCCGCCTCTCAGAACTCAAA GAGCTCTCCCTGCGTAACAACCGCGTCGTTGACCGAATCCCTCCCGAATTGGTCAACTGCAACAAACTGGAGACTCTAGATCTCGCTAACAACCAGTTCT TCGGCGACGTCCCTTCCGGTATCTCAACGCTCGTCAGGCTCCGATTCTTAAACCTCTCTTCCAACAATTTCTCCGGCGATTTGAGCTTCCTGCAGCATTT CCCCAATTTGGAAACCCTATCCCTCTCCAACAACTTCTTCACAGGTCAGATTCCAAATTCGGTTCGATCGTTTCGTAATCTACGCTCCTTCGATTTCTCC GGCAATCGATTAGCGAGATTAGAAATTGAATCCTTAGAGTATCCGAAACGGTATATATTCGCGGAGGAGGAATCAGAATCAGTCGCCGGTCCAATTTCCT CCGTTGAAGCTCCGGAACCATCGTTCCCTGGGAATTTGAACTACGAGAATGACGAGACGAAGAAGAAGAAGAAGCAGAAGCTAGCTGATTGGTTGCTAGG GTTTCTCGCCGGAGCAATGGCGGGGAGTATATCTGGATTTATATTCTGCGTCATGTTCAGGTTAGTCTTAGCGGCGGTGAGAGGCGGAGGTAAAGATTCA GGTCCCGCAATATTCAGTCCAGTGATTAAGAATCCGGCCGATTTAGCCTTCTTAGAGAAAGAAGACGCGGCAGCTACTTTAGAAATCATCGGCAAAGGCG GTTGCGGAGAAGTTTACAAAGCACAGTTGCCTGGAAGCAACGGCAAAATGATCGCAATCAAGAAGATTGTTCAGAACCGTAAAGAATCTACAGAGCAAGC AGAGCAAAAAGACTCCAAGAAGATGAGACAGATCGAGTCGGAGATCAATACGGTAAGCCAAATTCGCCACAGGAACCTTCTGCCGTTGCTTGCACACGTC ACTCGTCCAGACTGCCATTACTTAGTCTACGAGTTCATGAACAACGGCAGTTTACAGAACATGCTAGTGGATGTTTCGAAAGGGAAGACCGAGTTGGATT GGCCTGCAAGGTACAAGATTGCGGTAGGGGTAGCAGCAGGATTGGAGTATCTTCACATAAATCACAGCCCGCGTATAATCCACAGGGATCTGAAGCCCGG GAATGTACTATTGGACGACGATATGGAGCCTAGGATTACCGATTTCGGACTGGCGAAATCGATGCCAGATGCGCATACTCACATCACGAGCTCGAATGTG GCGGGGACGGTGGGGTACATAGCGCCCGAGTATCACCAGACGTTGAAGTTTACTGACAAATGTGATATCTATAGTTTTGGAGTGTTGCTTGGGGTGATGT TGATTGGTAAGCTTCCGTCAGATGAGTTCTTTCAGCATACCAGGGAGATGAGCTTGGTAAAATGGATGAAGAATGTAATGACGTCTGATGATCCGGGAAG GGCGATTGATCCGAAGCTGTTGGGGAAAGGGTATGATGAACAGATGCTGCTGGTGCTGAAAATTGCTTGCTTTTGTACCATTGAAGATCCGAAACAGAGG CCTAACAGTAAGGATGTGAGAGCCATGTTAGCTCAGATCAAACACTAA
AA sequence Show only first row Show all	>Lus10041953 pacid=23153730 polypeptide=Lus10041953 locus=Lus10041953.g ID=Lus10041953.BGIv1.0 annot-version=v1.0 MAVSHKPLLLLLIVIISLLLNVHARLLHLNPSDHRALSAVRRNLGFNPVVVSPCTLPGVFCQRRGLSSTGYELRVTRLVFNSQSLSGTLSPEISRLSELK ELSLRNNRVVDRIPPELVNCNKLETLDLANNQFFGDVPSGISTLVRLRFLNLSSNNFSGDLSFLQHFPNLETLSLSNNFFTGQIPNSVRSFRNLRSFDFS GNRLARLEIESLEYPKRYIFAEEESESVAGPISSVEAPEPSFPGNLNYENDETKKKKKQKLADWLLGFLAGAMAGSISGFIFCVMFRLVLAAVRGGGKDS GPAIFSPVIKNPADLAFLEKEDAAATLEIIGKGGCGEVYKAQLPGSNGKMIAIKKIVQNRKESTEQAEQKDSKKMRQIESEINTVSQIRHRNLLPLLAHV TRPDCHYLVYEFMNNGSLQNMLVDVSKGKTELDWPARYKIAVGVAAGLEYLHINHSPRIIHRDLKPGNVLLDDDMEPRITDFGLAKSMPDAHTHITSSNV AGTVGYIAPEYHQTLKFTDKCDIYSFGVLLGVMLIGKLPSDEFFQHTREMSLVKWMKNVMTSDDPGRAIDPKLLGKGYDEQMLLVLKIACFCTIEDPKQR PNSKDVRAMLAQIKH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Lus10041953 [exp]	0	1
AT2G02870			Galactose oxidase/kelch repeat...		Lus10036735 [exp]	2.4	0.8917
AT2G02870			Galactose oxidase/kelch repeat...		Lus10012841 [exp]	5.2	0.8737
AT5G01830			ARM repeat superfamily protein...		Lus10006090 [exp]	6.7	0.8689
AT4G27880			Protein with RING/U-box and TR...		Lus10022405 [exp]	7.7	0.8834
AT5G13810			Glutaredoxin family protein (....		Lus10024164 [exp]	7.7	0.8707
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Lus10037777 [exp]	9.9	0.8611
AT1G79590		ATSYP52, SYP52	syntaxin of plants 52 (.1.2)		Lus10016577 [exp]	12.4	0.8468
AT2G25670			unknown protein		Lus10033084 [exp]	17.0	0.8318
AT3G56880			VQ motif-containing protein (....		Lus10015982 [exp]	19.4	0.8654
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10026751 [exp]	21.5	0.8356

Compare expression of checked genes

Lus10041953 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.