Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21340 582 / 0 MATE efflux family protein (.1.2) AT4G39030 552 / 0 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1) AT2G38330 84 / 9e-17 MATE efflux family protein (.1) AT4G38380 57 / 2e-08 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017964 [exp] 936 / 0 AT2G21340 622 / 0.0 MATE efflux family protein (.1.2) Lus10018080 [exp] 578 / 0 AT2G21340 667 / 0.0 MATE efflux family protein (.1.2) Lus10017498 [exp] 524 / 0 AT2G21340 610 / 0.0 MATE efflux family protein (.1.2) Lus10042074 [exp] 514 / 3e-179 AT2G21340 603 / 0.0 MATE efflux family protein (.1.2) Lus10026829 [exp] 66 / 3e-11 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10023943 [exp] 64 / 2e-10 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 63 / 3e-10 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10012227 [exp] 56 / 4e-08 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 56 / 8e-08 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122600 [exp] 672 / 0 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2) Potri.009G122900 [exp] 596 / 0 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.016G126000 [exp] 64 / 2e-10 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.005G102800 [exp] 56 / 7e-08 AT4G38380 547 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 50 / 5e-06 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.004G183600 [exp] 46 / 6e-05 AT4G38380 604 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10041955 pacid=23153844 polypeptide=Lus10041955 locus=Lus10041955.g ID=Lus10041955.BGIv1.0 annot-version=v1.0 ATGCAAATCCAGGGCTTGCTTCATTCTTCCTATTCCACCCAATTCCACTCCCAAAACCTAAGATTTCCTTCCCAAGTTCCAATCTTTCGCAGGAACCCAT GCCGGATTTCACTTCCCAGGATCTTGGAATTGCAACAACCCTCTTCCCCTCCTCCTCCAAGCATTTTGAAATCCTCCAGACTTGTGAAATGCTGCTGCAT TACTCCAGCTCAGGAATTCGACAGTGTCAATGCAACTGATGAAGTCGTTGCAGAGGGAGTTGGATTGGAGGGGCAGAGCTTGTGGGAACAAATGAAGGAG ATTGTGAAGTTTACAGGGCCTGCTGCTGGGTTATGGTTATGTTCTCCATTGATGAGCTTAATTGACACTGTAGTCATTGCCCAAGGGAGCTCTCTTGAGC TTGCTGCTTTGGGTCCCGGGACAGTGTTATGCGACAATATGAGCTATGTGTTTATGTTTCTCTCCATTGCTACTTCAAACATGGTTGCGACTTCCCTTGC CAAAGAGGATAAAGAAGAAGTTCAATATCAGCTGTCAGTGTTGCTCTTCATTGGCTTGACTTGTGGCATCATGATGTTTCTGTTCACCAAGTTGTTTGGG CCAACTGTTTTAGCAGCTTTTGCCGGGTCGAATAATTCGCACATAGTACCTGCAGCAAACACTTATGTCCAGATCCGAGGCTTGGCATGGCCAGTGATTC TAATTGGATGGGTTGCTCAAAGTGCAAGCCTTGGGATGAAGGATGCTTTAGGGCCATTGAAGGCCTTGATAGCTGCGACTGCTGTGAATGGAATCGGTGA TGTAGTTCTATGCAGAGTTCTTGGATTTGGAATAGCTGGTGCAGCATGGGCAACACTTGCTTCACAAGTTGTTGCAGCTTGCATGATGATGGATTCACTG AACAAGAAGGGGTATAATGCATACGCCATCTCCGTTCCGACTACTGATGATCTCGTCAAAATATTCGGGCTCGCTGCTCCGGTCTTTGTCATGATGATCT CTAAGGTGGCTTTCTTCTCACTCCTGGTGTATTGCACAACATCAATGAGCACTCTTACTGTGGCTGCTCATCAGGTTGTGATTCAAGTGTTCATGATGGG GACAGTATGGGGAGAACCACTTTGTCAAACTGCTCAGACCTTCATGCCCGAGCTGCTCTACGGAATGAAGCAAAGTCTTGCGAGGGCTAGGATGCTGCTT AAATCCCTGATGATCACCGGAACAATCCTCGGACTCGGACTTGCAGTTCTGGGAACATCTGTACTTTGGTTCTTCCCCACTCTCTTCACCCCAGATCTTG AGATAATTAGAGAGATGCACAGAGTTCTGATTCCCTATTTTCTTGCACTGTCCGTAACGCCTTGCAGTCTCACCCTTGAAGGGACGTTGTTGGCTGGAAG GGATCTAAGATTCATTAGCCTATCCATGAGCGGCTGCTTTACTCTGGGTGCATTGGCACTGTTGATTGTTAGCAGCAGAGGCTACGGCTTGCCAGGCTGT TGGTTCGTGATGACAGGGTTTCAATGGGTATTCGAATCCCGCAGTAAAGCTGGTAACTTGGAACCAACAGATTCAAATCATTTCATCACTTCCATCGATG ATCCTGCTGACACCATCCTACTTCTAGTGTTTTCATGA
AA sequence Show only first row Show all	>Lus10041955 pacid=23153844 polypeptide=Lus10041955 locus=Lus10041955.g ID=Lus10041955.BGIv1.0 annot-version=v1.0 MQIQGLLHSSYSTQFHSQNLRFPSQVPIFRRNPCRISLPRILELQQPSSPPPPSILKSSRLVKCCCITPAQEFDSVNATDEVVAEGVGLEGQSLWEQMKE IVKFTGPAAGLWLCSPLMSLIDTVVIAQGSSLELAALGPGTVLCDNMSYVFMFLSIATSNMVATSLAKEDKEEVQYQLSVLLFIGLTCGIMMFLFTKLFG PTVLAAFAGSNNSHIVPAANTYVQIRGLAWPVILIGWVAQSASLGMKDALGPLKALIAATAVNGIGDVVLCRVLGFGIAGAAWATLASQVVAACMMMDSL NKKGYNAYAISVPTTDDLVKIFGLAAPVFVMMISKVAFFSLLVYCTTSMSTLTVAAHQVVIQVFMMGTVWGEPLCQTAQTFMPELLYGMKQSLARARMLL KSLMITGTILGLGLAVLGTSVLWFFPTLFTPDLEIIREMHRVLIPYFLALSVTPCSLTLEGTLLAGRDLRFISLSMSGCFTLGALALLIVSSRGYGLPGC WFVMTGFQWVFESRSKAGNLEPTDSNHFITSIDDPADTILLLVFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	0	1
AT2G21340			MATE efflux family protein (.1...		Lus10017964 [exp]	1.0	0.9594
AT1G08470		SSL3	strictosidine synthase-like 3 ...		Lus10008451 [exp]	3.5	0.9180
AT3G19490		ATNHD1	ARABIDOPSIS THALIANA NA/H ANTI...		Lus10019820 [exp]	4.9	0.9142
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	5.3	0.9210
AT5G64940		ATATH13, ATOSA1	A. THALIANA OXIDATIVE STRESS-R...		Lus10036636 [exp]	5.3	0.9260
AT5G08720			unknown protein		Lus10025701 [exp]	5.7	0.9217
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	6.3	0.8995
AT5G08720			unknown protein		Lus10035962 [exp]	8.7	0.9208
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10018747 [exp]	8.8	0.9158
AT5G47950			HXXXD-type acyl-transferase fa...		Lus10042432 [exp]	9.6	0.8576

Compare expression of checked genes

Lus10041955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.