Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21370 602 / 0 XK1, XK-1 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017967 [exp] 689 / 0 AT2G21370 592 / 0.0 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G122300 [exp] 665 / 0 AT2G21370 633 / 0.0 XYLULOSE KINASE 1, xylulose kinase-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00370 [flax] [poplar] FGGY_N FGGY family of carbohydrate kinases, N-terminal domain CL0108 [flax] [poplar] Actin_ATPase PF02782 [flax] [poplar] FGGY_C FGGY family of carbohydrate kinases, C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041956 pacid=23153596 polypeptide=Lus10041956 locus=Lus10041956.g ID=Lus10041956.BGIv1.0 annot-version=v1.0 ATGGCTTCAGGCGGTAAGGAATTGTTGTCAGGGAAGGAGAAGCTCTACTTGGGGATGGATTTCGGAACCTCTGGTGCTCGCTACGCCATTGTTGACAAAC AAGGGACGCTTCATTCAGAGGGAAAAAGGGAATACCCAATTTACAAGAATGAAGAAGAAACAGTGGATTGGGTACGTTCATGGAGAGTGACTCTCTTCTC ACTGCTAGAAGATGTTCCAACTCATCTCAAGCAACTGGTTGCTGCAATTTCCATCGACGGAACATCAGCAACTACAATCATTGTGGATAGAAACACAGGA GAGCCACTATGGAGGCCTTTCCTATACAACGAGAGCTGTCCTGATGCTCTGCCAGCCGTTAGATCGATTGCTCCTGCAAACCATACAGTCTGCTCCGGAT CCTCAACATTATGCAAGCTTGTTTCTTGGTGGAATATTAACAACAATTCGTCGAGAAAGAAACCGGCTGCACTGTTATTGCACCAGGCAGATTGGCTTCT GTGGCTCCTCCATGGGAGAGTTGGAGTAACTGATTATAATAATGCTCTCAAGGTTGGTTATGATCCTGAATCAGAATCCTACCCACCATGGCTGCTCAAT CAGCCATATTCAGAGCTTTTGCCATCTGTTATAGCGCCTGGAACTTCCATCGGTTGCTTGAAAGACGAGATTAGAACTCAATATGGATTTCGTGGAGATT GCATTGTATGCGCAGGCACAACAGATAGTATAGCTGCCTTTCTTGCTGCTCGCGCAACAGAACCTGGCAAAGCTGTCACGTCTCTGGGATCCACGCTTGC TATCAAGCTACTGAGCAACACGAGGATCGAGGATGCAAGGTACGGAGTGTACAGCCATCGCCTGGACGACAAATGGCTGGTAGGAGGTGCATCAAACACG GGAGGAGCCGTGCTTAGAACACTTTTCACTGATGAGCAGTTGGAGAAACTGAGTGAAGGTATAAATCCAGTGCAACCTTCTGCTCTTGATTACTACCCGC TCAAGGTCAATGGCGAGAGGTTTCCTGTGGCCGATCCTGACATGGCTCCAAGGCTGCATCCGAGGCCGGAAAGTGATGTTGAGTATCTACATGGCATCCT AGAATCCATTGCACGAATCGAGGGCAAGGCGTATAAGTTGTTAAAAGAGCTAGGTGCGACCGAAGTTGAACAAGTGTTCACTTCTGGAGGTGGAGCCAAG AACAACAAGTGGATGCAGATCAGGGAGAGGGTCATCGGGGTGCCTGTCAGCCGGGCAATCCACACGGAAGCTGCCTATGGAGCTGCTTTGTTGGCCCTGA AAGGTGCCAAAGGATCATAG
AA sequence Show only first row Show all	>Lus10041956 pacid=23153596 polypeptide=Lus10041956 locus=Lus10041956.g ID=Lus10041956.BGIv1.0 annot-version=v1.0 MASGGKELLSGKEKLYLGMDFGTSGARYAIVDKQGTLHSEGKREYPIYKNEEETVDWVRSWRVTLFSLLEDVPTHLKQLVAAISIDGTSATTIIVDRNTG EPLWRPFLYNESCPDALPAVRSIAPANHTVCSGSSTLCKLVSWWNINNNSSRKKPAALLLHQADWLLWLLHGRVGVTDYNNALKVGYDPESESYPPWLLN QPYSELLPSVIAPGTSIGCLKDEIRTQYGFRGDCIVCAGTTDSIAAFLAARATEPGKAVTSLGSTLAIKLLSNTRIEDARYGVYSHRLDDKWLVGGASNT GGAVLRTLFTDEQLEKLSEGINPVQPSALDYYPLKVNGERFPVADPDMAPRLHPRPESDVEYLHGILESIARIEGKAYKLLKELGATEVEQVFTSGGGAK NNKWMQIRERVIGVPVSRAIHTEAAYGAALLALKGAKGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G21370		XK1, XK-1	XYLULOSE KINASE 1, xylulose ki...		Lus10041956 [exp]	0	1
AT5G53850			haloacid dehalogenase-like hyd...		Lus10005542 [exp]	2.0	0.9455
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10025809 [exp]	2.4	0.9539
AT4G12830			alpha/beta-Hydrolases superfam...		Lus10002142 [exp]	3.2	0.9535
AT2G32500			Stress responsive alpha-beta b...		Lus10015134 [exp]	3.7	0.9354
AT1G74410			RING/U-box superfamily protein...		Lus10001654 [exp]	3.9	0.9452
AT5G27290			unknown protein		Lus10033822 [exp]	3.9	0.9480
AT1G60230			Radical SAM superfamily protei...		Lus10029159 [exp]	4.2	0.9311
AT1G60230			Radical SAM superfamily protei...		Lus10000081 [exp]	4.9	0.9333
AT3G29185			Domain of unknown function (DU...		Lus10032999 [exp]	5.5	0.9205
					Lus10012544 [exp]	7.7	0.9058

Compare expression of checked genes

Lus10041956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.