Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28560 315 / 8e-104 SRD2 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017968 [exp] 588 / 0 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G143000 [exp] 455 / 5e-157 AT1G28560 361 / 5e-122 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12251 [flax] [poplar] zf-SNAP50_C snRNA-activating protein of 50kDa MW C terminal
Representative CDS sequence Show only first row Show all	>Lus10041957 pacid=23153951 polypeptide=Lus10041957 locus=Lus10041957.g ID=Lus10041957.BGIv1.0 annot-version=v1.0 ATGGACGTGGAAGGGGCAGTGGAGTCCAACCATGGGAGTTATGGCGATGAATTTGCAGAGGAGGAGGAGGAGGACAACAACGTGGAACAGTCTGACGCTC CCCCTCTGTTGATTGCTCGTGGCGGTCCTTTGTATACGCCTAACTTGGTCAGTCCCCTCACTCAAGTTTCCGAGTTTGAAGATTCCGTTCTCAGTGCGCT CCAGAGCTTGAAGGATGAATTGGTCTTTGATTCTTCGGAAGTCTGCAACCAAGATGATATCACGGTTGATGACATTAGAATTATCAGCAATGAGGAGTTG GTAGAGATGGCATTGAAGGAAGTTTTCAAAGATGGAAGTGAAAATGCAAGTTGTTCAAATCCCTCCGTCCTAAATCAGAATGATAGAGTGGAGGGTGATC ATAGCACAACGAGCAAGATGCAAACTCATTCAAAAACCTTCGGAAGAAAAGGTGGAGCTTCAGTTACTTCAGAATCAAATTCCGAAACCAAATCTGCAAA CAATAGCAACACAAGAAGGGGCAAGAACTCGAGGAAGAAAAAGGGAAAGGGCGAAGAGGAGAGCTACCCTGCAATAGTAGATGAGCTACTGAGCATCAAA CAGAAACAGGATGAAGATAGAAGAACAGCTACATTACATTCCCTCAGTGTTGGGTGCAAAGTCAACAAAGGTTCTAGTGCATCTTCAGAAAGTGGCACGA TAATGAAATCTCTGAGATCTGTCAACTCAAATATGCCGCTTGTGAAGACCTCGGATATTACACAAGAAGTACCTGTGCAACTGCCTGAGGTAGTTCTTGT TGTGGAGGTGTACCATAATGTTCATCAATGGCAGAAGACTCAAGAGTTTTTGGTGCTAGGGCGACAACTGTTGACCGAACTGAAGGACAAGATCTATTGC AAGACGGATGAAATAATGAAAAGGGCGGAGCACTATGACGCTTCAGGATATTTTCTCATCGAGGACTTGTTCCTCAATGATATGAGGGAAAACAATGGTA CAGATTATAGCGAACCGATATTCGACTGGCTTAACAACTCAAAAGAAGAAGTTTCTAAGAAATGGGATTACATCATAGGCGGAGACCTAAAGCGCAAGCA CAAAGCTCTCGTAGGCGAGATGCCAAACCCTAGTTTACCAGTATTCCGACGTGCTGAGATGCAAACCATGCGTTTTTGCGATTTGAAGTTTCAGTTGGGT GCTCCATATCTCTACTGTCATCAGGGGGACTGCAAGCATAGTATAGTGATTCGAGACATGAGGTTGATTCATCCCGAAGATGCACAGAATCGAGCTGCTT ATCCTATTGAGAGCTTTCGACTGAAAGTGCGTTGGCAGAAATGTAGCGTGTGCAAGTTATTTAGAGCGAAGAAGGTGACGGTGGATGACAAATTGGCCAA ACATAATCCTTGCTACTTCTGCGATGCTTGTTATTTCCTTCTTCATTACAAAGAGAACAATGAACTCCTGTATCATGATTTCTCTGTATATAACTACATT CATGATTAG
AA sequence Show only first row Show all	>Lus10041957 pacid=23153951 polypeptide=Lus10041957 locus=Lus10041957.g ID=Lus10041957.BGIv1.0 annot-version=v1.0 MDVEGAVESNHGSYGDEFAEEEEEDNNVEQSDAPPLLIARGGPLYTPNLVSPLTQVSEFEDSVLSALQSLKDELVFDSSEVCNQDDITVDDIRIISNEEL VEMALKEVFKDGSENASCSNPSVLNQNDRVEGDHSTTSKMQTHSKTFGRKGGASVTSESNSETKSANNSNTRRGKNSRKKKGKGEEESYPAIVDELLSIK QKQDEDRRTATLHSLSVGCKVNKGSSASSESGTIMKSLRSVNSNMPLVKTSDITQEVPVQLPEVVLVVEVYHNVHQWQKTQEFLVLGRQLLTELKDKIYC KTDEIMKRAEHYDASGYFLIEDLFLNDMRENNGTDYSEPIFDWLNNSKEEVSKKWDYIIGGDLKRKHKALVGEMPNPSLPVFRRAEMQTMRFCDLKFQLG APYLYCHQGDCKHSIVIRDMRLIHPEDAQNRAAYPIESFRLKVRWQKCSVCKLFRAKKVTVDDKLAKHNPCYFCDACYFLLHYKENNELLYHDFSVYNYI HD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G28560		SRD2	SHOOT REDIFFERENTIATION DEFECT...		Lus10041957 [exp]	0	1
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	2.4	0.9395
AT5G51020		CAA33, CRL	constitutive activator of AAA-...		Lus10032529 [exp]	2.8	0.9404
AT1G30140			unknown protein		Lus10024751 [exp]	3.7	0.9406
AT4G39952			Pentatricopeptide repeat (PPR)...		Lus10010688 [exp]	4.7	0.9236
AT5G26610			D111/G-patch domain-containing...		Lus10031446 [exp]	5.7	0.9346
AT3G06760			Drought-responsive family prot...		Lus10010305 [exp]	5.9	0.9082
AT4G03115			Mitochondrial substrate carrie...		Lus10024769 [exp]	7.7	0.9233
AT1G55340			Protein of unknown function (D...		Lus10013412 [exp]	8.1	0.9326
AT5G11270		OCP3	overexpressor of cationic pero...		Lus10002899 [exp]	8.2	0.9086
AT3G47160			RING/U-box superfamily protein...		Lus10001209 [exp]	8.5	0.9262

Compare expression of checked genes

Lus10041957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.