Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39050 1085 / 0 Kinesin motor family protein (.1) AT2G21380 1041 / 0 Kinesin motor family protein (.1) AT1G21730 630 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G12020 624 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G06670 598 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G10180 329 / 1e-95 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G59540 299 / 1e-87 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT4G24170 295 / 4e-85 ATP binding microtubule motor family protein (.1) AT1G18370 285 / 1e-81 HIK, ATNACK1 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1) AT3G43210 283 / 5e-81 TES, ATNACK2 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017969 [exp] 1410 / 0 AT4G39050 1517 / 0.0 Kinesin motor family protein (.1) Lus10017496 [exp] 1038 / 0 AT4G39050 1235 / 0.0 Kinesin motor family protein (.1) Lus10028790 [exp] 985 / 0 AT4G39050 1242 / 0.0 Kinesin motor family protein (.1) Lus10025688 [exp] 757 / 0 AT1G21730 1042 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018145 [exp] 646 / 0 AT1G21730 1033 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016236 [exp] 546 / 1e-178 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10029307 [exp] 533 / 4e-174 AT3G12020 1120 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010441 [exp] 335 / 3e-98 AT3G10180 1214 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012103 [exp] 333 / 6e-97 AT3G10180 1271 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G161100 [exp] 1199 / 0 AT4G39050 1411 / 0.0 Kinesin motor family protein (.1) Potri.009G122100 [exp] 1199 / 0 AT4G39050 1379 / 0.0 Kinesin motor family protein (.1) Potri.006G194900 [exp] 698 / 0 AT3G12020 1278 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G081300 [exp] 665 / 0 AT1G21730 1063 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G060400 [exp] 663 / 0 AT3G12020 1281 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G040700 [exp] 336 / 5e-98 AT3G10180 1336 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G013300 [exp] 298 / 4e-87 AT1G59540 885 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.006G136600 [exp] 296 / 7e-86 AT3G43210 1250 / 0.0 TETRASPORE, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, ATP binding microtubule motor family protein (.1) Potri.002G027600 [exp] 293 / 6e-85 AT2G21300 722 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.012G054400 [exp] 284 / 2e-81 AT1G18370 1466 / 0.0 HINKEL, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Lus10041958 pacid=23153721 polypeptide=Lus10041958 locus=Lus10041958.g ID=Lus10041958.BGIv1.0 annot-version=v1.0 ATGTACTTAGGTGGTAGCTCAACCGGTGGTTATGGAAGTCGTACGCCGGTTGGTTACGGCTCCGATGAGCTGGTTTCCGAGCCTCTTGATGCTCCCATCA GTGGCGAGAGTATATCGGTGACGATTCGGTTTAGGCCGTTGAGCGAGAGGGAATTTCAGAGAGGAGACGAGATTGCCTGGTATAGTGACGGAGATAAGGC TGTCAGGAATGAGTATAATCCAGCCTCGGCTTACGCATTTGATAAAGTATTTGGACCACATACAAATACTGAAGACGTGTATGATATTGCTGCAAGGCCA GTGGTCAAGGCTGCAATGGAGGGAATCAATGGAACTGTGTTTGCCTATGGTGTTACAAGTAGTGGAAAGACATTCACCATGCATGGAGATCAAAGTGCTC CTGGTATTATACCATTGGCCATAAAGGATGTTTTCAGCATGATCCAAGAGACTCCAGGAAGAGAGTTTCTGCTGCGGGTCTCATATCTTGAAATTTACAA CGAGATTATAAATGACTTACTGGATCCAACTGGCCAAAATTTGCGTGTTAGAGAAGATGCACAGGGCACTTATGTTGAGGGTATAAAGGAAGAAGTTGTT TTGTCTCCAGGACATGCATTATCTTTCATTGCTGCCGGAGAAGAACATCGCCATGTCGGTTCAAATAATTTCAACCTGTTCAGTAGTCGAAGTCACACCA TTTTCACACTTATGATTGAAAGCAGTGCTCATGGTGATGAGTATGATGGTGTCATTTTCTCTCAACTTAACTTAATTGATCTTGCTGGATCTGAGAGCTC GAAAACTGAAACAACTGGGTTGAGGAGAAAGGAAGGAGCTTACATCAACAAAAGCCTTCTTACCCTTGGAACCGTGATAGGAAAGCTCAGTGAAGGGAAG TCATCTCATGTTCCATATCGAGATTCTAAGCTCACCCGCCTCTTGCAGTCATCGTTGAGTGGCCATGGACACGTTTCACTTATTTGTACAATTACTCCTG CATCTAGTAACTTTGAGGAAACTCATAATACACTAAAGTTTGCTAGCAGAGCAAAGCGTGTGGAGATCTATGCTTCAAGGAACAAGATTATTGATGAAAA GTCTCTAATTAAGAAGTATCAGAGAGAAATCTCGACTCTTAAAGAGGAACTTGATAAGTTAAGAAGTGGTATGCTAGTTGGTGTGAGTCACGAGGAGATT CTGAGCTTAAAACAGAAGTTGGAAGAAGGACAAGTAAAGATGCAATCCAGATTGGAAGAAGAGGAGGAAGCAAAGGCTGCTCTCATGAGTAGAATCCAGA GGTTAACCAAGCTTATTCTTGTCTCTACAAAAAACTCAATTCCTGGATTGGTTGATGTTCCTGCTCATCAGCGGAGTCTCTCAGATGATAAACTGGATGT TCTGCGAGATGGCACATTGCTTCTGGAAAGTGAGAACAAAGAATCTGCATCTTCTGTGACTGCATTTTCATCAGATCTAATACATGAATCCATGCATAGA AGATCATCTGGCAAGTGGAATAAGGAGCTTTCACCTGCATGCAGCACAGCTACTGAGTCAACCGCTGGTGGATTCATTAGCTCTTCAACAAGTGGACTGA CTGAAGATCAGATGGACCTTTTAGTTGAGCAAGTCAAGATGCTTGCTGGAGAGATTGCATTCAGCACTAGTACTCTGAAGCGCTTAGTGGAGCATTCTGT TACTGATCCCGATAGCTCGAAAACTCAAATCCAGAACTTGGAACGCGAGATCCAGGAAAAGAGAAGGCAAATGAGAGCACTAGAACAACGCATTATTGAG AGTGGCGAGGCTTCAATTGCCAATGGTTCATTGGTTGACATGCAGCAGACAGTCATGCAGTTGATGACTCAGTGCAATCAACAGGCTTTTGAGCTTGAGA TAAAATCAGCAGACAATCGTATCCTTCAGGAGCAACTGCAGTCTAAGTGTTTGGAGATTAAGGAATTGCAAGACAAGACCAATCTTCTGGAACAGCAGTT GGCATCACTATTCGGTGACAAGTCGTTCGGTGACAAGTCGTTACGAACTTCTGGACAATCAGTGCCTGAAGAATTTGTTGACGAATTGAAGAAGAAAGTT CAGTCACAGGAGATTGCAAATGAAAAGTTGAAGATAGAGCATGTTCAGCTTTCAGAGGAGAACAGTGGATTACGTGTGCAAAACCAGAAGCTGGGTGAAG AAGCTTATTATGCAAAGGAACTGGCATCTGCTGCTGCAGCAAGGAAACAGCGAGAGGCAGCACTTGAGGCCGCCTTGGCTGAAAAGGAACTCATAGAAGA TGAGTACAGGAAACGTGCTGAAGAAGCAAAACGAAGGGAAGAATCGTTGGAGAATGACTTGGCAAACATGTGGGTGCTTGTTGCTAAGTTGAAGAAGGAA GGAGGAAATGTCACCGAGTTTAACACCGAGGAGAGGACCAGTCCTGGAGCTGGGAATCACATGAGCGAACCAGAATCGAACGGGTTCGAGCATGGTTCTG TCTTGAGAGAAAGACAAGTCAGCAGCGATGATTCGAAGCGAGCTGATGAAATGCTAAAGGATGAGCCGTTGGTTATTCGTTTGAAGGCGCGGATGCAAGA GATGAAGGAAAAAGAACTGAAACAGTCTGGAAATGGAGATGCCAATTCTCACATCTGTAAATGTGTAAATCTTGTTCCCTTGCCTGTTCCGAGTGTCCAA TCTGCCGGACCAAGATTGCAGATAGGCTTTTCGCATTCACTTCCTGACAATTCCCTCTCTCCAAACGAACTATCAGACCCTGAATCGAAATCTCCGGACT CGGGGAGGCTTCCGCTGCCACGACTTAACGTTAAGGCGAGAAGCAAAATAGTAGCTGGGAGCGTTGTGGGATTCATTAATTACTTTGGTGTATATGCAAA TGTCTAA
AA sequence Show only first row Show all	>Lus10041958 pacid=23153721 polypeptide=Lus10041958 locus=Lus10041958.g ID=Lus10041958.BGIv1.0 annot-version=v1.0 MYLGGSSTGGYGSRTPVGYGSDELVSEPLDAPISGESISVTIRFRPLSEREFQRGDEIAWYSDGDKAVRNEYNPASAYAFDKVFGPHTNTEDVYDIAARP VVKAAMEGINGTVFAYGVTSSGKTFTMHGDQSAPGIIPLAIKDVFSMIQETPGREFLLRVSYLEIYNEIINDLLDPTGQNLRVREDAQGTYVEGIKEEVV LSPGHALSFIAAGEEHRHVGSNNFNLFSSRSHTIFTLMIESSAHGDEYDGVIFSQLNLIDLAGSESSKTETTGLRRKEGAYINKSLLTLGTVIGKLSEGK SSHVPYRDSKLTRLLQSSLSGHGHVSLICTITPASSNFEETHNTLKFASRAKRVEIYASRNKIIDEKSLIKKYQREISTLKEELDKLRSGMLVGVSHEEI LSLKQKLEEGQVKMQSRLEEEEEAKAALMSRIQRLTKLILVSTKNSIPGLVDVPAHQRSLSDDKLDVLRDGTLLLESENKESASSVTAFSSDLIHESMHR RSSGKWNKELSPACSTATESTAGGFISSSTSGLTEDQMDLLVEQVKMLAGEIAFSTSTLKRLVEHSVTDPDSSKTQIQNLEREIQEKRRQMRALEQRIIE SGEASIANGSLVDMQQTVMQLMTQCNQQAFELEIKSADNRILQEQLQSKCLEIKELQDKTNLLEQQLASLFGDKSFGDKSLRTSGQSVPEEFVDELKKKV QSQEIANEKLKIEHVQLSEENSGLRVQNQKLGEEAYYAKELASAAAARKQREAALEAALAEKELIEDEYRKRAEEAKRREESLENDLANMWVLVAKLKKE GGNVTEFNTEERTSPGAGNHMSEPESNGFEHGSVLRERQVSSDDSKRADEMLKDEPLVIRLKARMQEMKEKELKQSGNGDANSHICKCVNLVPLPVPSVQ SAGPRLQIGFSHSLPDNSLSPNELSDPESKSPDSGRLPLPRLNVKARSKIVAGSVVGFINYFGVYANV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39050			Kinesin motor family protein (...		Lus10041958 [exp]	0	1
AT4G39050			Kinesin motor family protein (...		Lus10017969 [exp]	1.4	0.9235
AT4G01210			glycosyl transferase family 1 ...		Lus10002154 [exp]	2.4	0.8508
AT5G11490			adaptin family protein (.1.2)		Lus10011675 [exp]	3.7	0.8910
AT1G60070			Adaptor protein complex AP-1, ...		Lus10030640 [exp]	5.3	0.8549
AT1G77680			Ribonuclease II/R family prote...		Lus10014833 [exp]	5.7	0.8371
AT3G58640			Mitogen activated protein kina...		Lus10017649 [exp]	7.1	0.8558
AT1G60860		AGD2	ARF-GAP domain 2 (.1)		Lus10030921 [exp]	14.8	0.8041
AT3G13290		VCR	varicose-related (.1)		Lus10039116 [exp]	15.0	0.8473
AT5G06970			Protein of unknown function (D...		Lus10026160 [exp]	15.7	0.8536
AT3G43220			Phosphoinositide phosphatase f...		Lus10039913 [exp]	16.5	0.8482

Compare expression of checked genes

Lus10041958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.