Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16430 732 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT2G27190 644 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT1G56360 600 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 590 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT1G52940 522 / 0 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT5G34850 520 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G18130 518 / 0 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT3G46120 400 / 3e-137 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 294 / 4e-95 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52820 291 / 4e-94 ATPAP22, PAP22 purple acid phosphatase 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028799 [exp] 818 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 818 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 775 / 0 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 767 / 0 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 658 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10024299 [exp] 592 / 0 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10039978 [exp] 523 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10027710 [exp] 523 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 514 / 1e-180 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G160100 [exp] 765 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 763 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.005G233400 [exp] 707 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 686 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.006G063700 [exp] 533 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G024800 [exp] 525 / 0 AT5G34850 742 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 525 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.011G138200 [exp] 307 / 3e-100 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 290 / 1e-93 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 281 / 8e-90 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10041959 pacid=23153498 polypeptide=Lus10041959 locus=Lus10041959.g ID=Lus10041959.BGIv1.0 annot-version=v1.0 ATGGGCATTCTGGTTATGTCATCTTCTGTGACACTCTGTTTTCTGGTTGCTCTGTTTTTCTCCGCCTCACTCTGCAATGGCGGCCACACCAGCAGCTTCG TCAGGAAACTTCAGAAGTCGGTCGACATGCCTCTCCACAGCGACGTCTTCTGGTCCCCTTCCGGCTACAATGCTCCCCAGCAGGTGCACATAACGCAAGG GGATCATGAAGGGAAGGGGATGATAGTGTCGTGGGTGACGACGGATGAACCGGGTTCGAGTAAAGTTGTTTACTGGAAGGATGAGAGCAGTGAGAAGAAG AAGGTTGCTATAGGGAAACATAAGATTTACAAGTACTATAACTACACTTCTGGGTACATTCACCATTGCACCATTCGGAACTTGGAGTATGACACAAAGT ATTACTATAAAGTTGGGATTGGACATACTGTAAGGAGGTTCTACTTCACAACTCCACCTCCAGTCGGCCCAGATGTCCCTTACACCTTTGGCTTGATTGG TGATCTTGGCCAGACATTCGACTCCAATGTTACACTCACTCACTACGAAAACAACCCCCAAAACCCACAAACAGTGTTGTTCATTGGGGATCTTTCGTAT GCCGATAACTACCCGAATCACGATAGCGTGAGATGGGACACGTGGGCGAGGTTCGTCGAGAGAAGTGTCGCTTATCAGCCTTGGATATGGACTCCCGGCA ACCACGAGATGGATTTCGCCCCTGAAATTGGTGAAAACAAGCCATTTAAGCCTTTCACAAACAGGTACCATGTACCATTCAGAGCATCTGGTAGTACTTC TCCACTTTGGTACTCAATCAAGAGAGCTTCAGCATACATTATAGTCTTGTCTTCCTACTCAGCATATGGTACATATACTCCTCAATATGAATGGTTGCTA GCCGAGCTACCCAAGGTTAACCGGACCGAGACACCATGGTTGATTGTGATGGTGCATTCCCCGTGGTACAACAGCTACAACTACCATTACATGGAAGGAG AAAGCATGAGGGTCATGTTCGAGTCGTGGCTTGTCGATGCTAAAGTCGACATTGTCCTTTCTGGTCATGTTCACGCCTACGAACGATCTGAACGTATCTC CAACATAGCTTACAACATAGCAAACGGGAAATGTAATCCGGTGAGGAATCAGAGCGCTCCGGTTTACATCACCATTGGCGACGGAGGAAACATCGAAGGG TTAGCGACCGAAATGAATAACCCGCAGCCAGAGTATTCTGCATTCCGGGAGGCGAGTTTCGGACATGCAATTTTGGAGATCAAGAACCGGACTCATACTC ATTATAGTTGGCATAGGAACCAAGATGGTTACGCCATGGAAGCTGATTCTGTGTGGTTCTACAACAGATTTTGGCACCCTGTTGATGATTCCACCACCAG TACTCAATCTTGA
AA sequence Show only first row Show all	>Lus10041959 pacid=23153498 polypeptide=Lus10041959 locus=Lus10041959.g ID=Lus10041959.BGIv1.0 annot-version=v1.0 MGILVMSSSVTLCFLVALFFSASLCNGGHTSSFVRKLQKSVDMPLHSDVFWSPSGYNAPQQVHITQGDHEGKGMIVSWVTTDEPGSSKVVYWKDESSEKK KVAIGKHKIYKYYNYTSGYIHHCTIRNLEYDTKYYYKVGIGHTVRRFYFTTPPPVGPDVPYTFGLIGDLGQTFDSNVTLTHYENNPQNPQTVLFIGDLSY ADNYPNHDSVRWDTWARFVERSVAYQPWIWTPGNHEMDFAPEIGENKPFKPFTNRYHVPFRASGSTSPLWYSIKRASAYIIVLSSYSAYGTYTPQYEWLL AELPKVNRTETPWLIVMVHSPWYNSYNYHYMEGESMRVMFESWLVDAKVDIVLSGHVHAYERSERISNIAYNIANGKCNPVRNQSAPVYITIGDGGNIEG LATEMNNPQPEYSAFREASFGHAILEIKNRTHTHYSWHRNQDGYAMEADSVWFYNRFWHPVDDSTTSTQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16430		ATPAP10, PAP10	purple acid phosphatase 10 (.1...		Lus10041959 [exp]	0	1
AT4G18130		PHYE	phytochrome E (.1)		Lus10011967 [exp]	1.0	0.9362
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10023009 [exp]	2.0	0.9112
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Lus10039671 [exp]	2.4	0.8868
AT1G22260		AtZYP1a, ZYP1a	Myosin heavy chain-related pro...		Lus10032798 [exp]	5.1	0.8506
AT2G36870		XTH32	xyloglucan endotransglucosylas...		Lus10001396 [exp]	5.5	0.8743
AT1G07220			Arabidopsis thaliana protein o...		Lus10018239 [exp]	5.7	0.8774
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	7.3	0.8602
AT1G72790			hydroxyproline-rich glycoprote...		Lus10008464 [exp]	8.4	0.8628
AT2G39730		RCA	rubisco activase (.1.2.3)		Lus10010868 [exp]	8.8	0.8317
AT1G69450			Early-responsive to dehydratio...		Lus10030431 [exp]	10.1	0.8629

Compare expression of checked genes

Lus10041959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.