Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39100 290 / 1e-100 SHL1 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G22140 272 / 2e-93 EBS EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) AT4G04260 222 / 5e-74 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G14700 56 / 3e-09 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT4G12620 54 / 1e-08 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G43990 50 / 2e-07 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G23120 46 / 5e-06 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT4G11560 46 / 6e-06 bromo-adjacent homology (BAH) domain-containing protein (.1) AT2G02470 46 / 6e-06 Alfin AL6 alfin-like 6 (.1.2) AT2G25120 44 / 5e-05 Bromo-adjacent homology (BAH) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017482 [exp] 338 / 2e-119 AT4G39100 326 / 2e-114 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10028801 [exp] 337 / 3e-119 AT4G39100 324 / 1e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10017968 [exp] 298 / 1e-100 AT1G28560 334 / 1e-111 SHOOT REDIFFERENTIATION DEFECTIVE 2, snRNA activating complex family protein (.1.2) Lus10015543 [exp] 267 / 3e-91 AT4G22140 378 / 8e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10020020 [exp] 265 / 2e-90 AT4G22140 375 / 7e-134 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Lus10008492 [exp] 45 / 3e-05 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10008527 [exp] 45 / 3e-05 AT4G11560 596 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10023084 [exp] 43 / 0.0001 AT4G23860 483 / 1e-169 PHD finger protein-related (.1.2.3) Lus10031279 [exp] 42 / 0.0002 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G159900 [exp] 335 / 2e-118 AT4G39100 323 / 2e-113 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.009G121000 [exp] 328 / 8e-116 AT4G39100 318 / 2e-111 short life, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.004G004900 [exp] 274 / 4e-94 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.011G010901 [exp] 273 / 1e-93 AT4G22140 401 / 1e-143 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.006G270601 [exp] 272 / 2e-93 AT4G22140 409 / 2e-147 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.014G157100 [exp] 271 / 3e-93 AT4G22140 385 / 7e-138 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.002G226000 [exp] 270 / 1e-92 AT4G22140 379 / 2e-135 EARLY BOLTING IN SHORT DAYS, PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.1), PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein (.2) Potri.001G104300 [exp] 47 / 3e-06 AT4G11560 607 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.003G127400 [exp] 47 / 3e-06 AT4G11560 609 / 0.0 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.009G054300 [exp] 43 / 9e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [flax] [poplar] zf-FYVE-PHD PF00628 [flax] [poplar] PHD PHD-finger CL0390 [flax] [poplar] PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10041960 pacid=23153766 polypeptide=Lus10041960 locus=Lus10041960.g ID=Lus10041960.BGIv1.0 annot-version=v1.0 ATGCGCCCGTCCGATCCTTCCAAGTCCTCGTACGTGGCGAGGATCGAGCGAATTGAGTCCGACAGTCGAGGCGCCAACGTGAAGGTACACGTAAGGTGGT ATTACCGGCCGGAGGAATCAATTGGTGGCCGCCGGCAGTTCCATGGCTCTAAGGAAGTGTTCCTCTCTGACCACTGCGATATTCAGAGCGCCGATACGAT CGAAGGGAAATGTACCGTCCATAGTTTCAAGAGCTACACGAAGCTTGACGCTGTTGGGAATGACGACTTCTTCTGCCGGTTCGAGTATAACTCATCCACT GGAGCTTTCAATCCTGACAGAGTTGCCGTGTATTGTAAATGCGAGATGCCTTATAATCCTGATGACTTGATGGTGCAATGTGAAGGCTGCAGCGACTGGT TTCATCCTGCTTGTATAGAAATGACGGTAGAGGAAGCTAAACGATTAGACCACTTCTTCTGTGAGACTTGCTCATCCCAAGTCCAAAAGAACTTGCAGAA TTCACATGCTACAACTACTACTCCAAGTGAATCAGATGCCAAGGCTGGTAATGCTGGTTCATCTGTCTATAATCTTAAAAGACACCCTCTTTCGCTGCTG AGGGGGAAGCCCTGA
AA sequence Show only first row Show all	>Lus10041960 pacid=23153766 polypeptide=Lus10041960 locus=Lus10041960.g ID=Lus10041960.BGIv1.0 annot-version=v1.0 MRPSDPSKSSYVARIERIESDSRGANVKVHVRWYYRPEESIGGRRQFHGSKEVFLSDHCDIQSADTIEGKCTVHSFKSYTKLDAVGNDDFFCRFEYNSST GAFNPDRVAVYCKCEMPYNPDDLMVQCEGCSDWFHPACIEMTVEEAKRLDHFFCETCSSQVQKNLQNSHATTTTPSESDAKAGNAGSSVYNLKRHPLSLL RGKP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39100		SHL1	short life, PHD finger family ...		Lus10041960 [exp]	0	1
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10019388 [exp]	4.0	0.9158
AT1G32370		TTM1, TOM2B	tobamovirus multiplication 2B ...		Lus10040105 [exp]	5.0	0.8975
AT5G17060		ATARFB1B	ADP-ribosylation factor B1B (....		Lus10038245 [exp]	5.5	0.8835
AT1G24450		NFD2	NUCLEAR FUSION DEFECTIVE 2, Ri...		Lus10002362 [exp]	6.9	0.8945
AT4G10170			SNARE-like superfamily protein...		Lus10002944 [exp]	6.9	0.9133
AT1G21200	Trihelix		sequence-specific DNA binding ...		Lus10018886 [exp]	10.0	0.8977
AT3G55920			Cyclophilin-like peptidyl-prol...		Lus10030408 [exp]	12.0	0.8853
AT3G61113			Ubiquitin related modifier 1 (...		Lus10041378 [exp]	13.9	0.8975
AT4G02080		ASAR1, ATSARA1C...	secretion-associated RAS super...		Lus10031408 [exp]	15.5	0.8860
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Lus10028956 [exp]	15.6	0.8909

Compare expression of checked genes

Lus10041960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.