Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18990 78 / 2e-16 B3 REM39, VRN1 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) AT1G49475 67 / 4e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT3G18960 66 / 8e-13 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G01580 65 / 1e-12 B3 AP2/B3-like transcriptional factor family protein (.1) AT4G31690 64 / 2e-11 B3 REM9 Transcriptional factor B3 family protein (.1) AT4G31640 59 / 5e-10 B3 REM5 transcriptional factor B3 family protein (.1) AT4G31680 59 / 7e-10 B3 REM8 Transcriptional factor B3 family protein (.1) AT5G18090 58 / 1e-09 B3 AP2/B3-like transcriptional factor family protein (.1) AT2G24700 57 / 5e-09 B3 REM10 Transcriptional factor B3 family protein (.1) AT5G18000 56 / 8e-09 B3 VDD VERDANDI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017970 [exp] 461 / 4e-166 AT3G18990 90 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10008529 [exp] 187 / 1e-58 AT3G18990 87 / 8e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10038189 [exp] 89 / 1e-20 AT3G18990 82 / 8e-19 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10010759 [exp] 88 / 4e-20 AT3G18990 91 / 1e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10025913 [exp] 84 / 6e-19 AT3G18990 81 / 2e-18 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10027943 [exp] 78 / 4e-16 AT3G18960 76 / 9e-16 AP2/B3-like transcriptional factor family protein (.1) Lus10035637 [exp] 78 / 5e-16 AT3G18990 91 / 9e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10012039 [exp] 76 / 6e-16 AT3G18990 74 / 4e-15 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Lus10039303 [exp] 77 / 2e-15 AT3G18990 76 / 1e-14 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G191500 [exp] 80 / 5e-17 AT3G18990 189 / 5e-57 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147200 [exp] 69 / 4e-13 AT1G49480 110 / 5e-28 related to vernalization1 1 (.1) Potri.004G230100 [exp] 67 / 1e-12 AT3G18990 161 / 1e-44 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G057101 [exp] 59 / 3e-10 AT3G18990 76 / 5e-16 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.004G147000 [exp] 60 / 4e-10 AT3G18990 258 / 3e-83 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.009G108500 [exp] 59 / 5e-10 AT3G18990 395 / 2e-137 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.007G035700 [exp] 56 / 4e-09 AT4G01580 71 / 4e-15 AP2/B3-like transcriptional factor family protein (.1) Potri.004G146900 [exp] 50 / 8e-07 AT3G18990 353 / 6e-121 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.014G036800 [exp] 49 / 1e-06 AT3G18990 92 / 3e-20 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1) Potri.018G124501 [exp] 46 / 2e-06 AT3G18990 59 / 3e-11 REDUCED VERNALIZATION RESPONSE 1, REPRODUCTIVE MERISTEM 39, AP2/B3-like transcriptional factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF02362 [flax] [poplar] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Lus10041961 pacid=23153990 polypeptide=Lus10041961 locus=Lus10041961.g ID=Lus10041961.BGIv1.0 annot-version=v1.0 ATGGGTTCTCGAAATTTCTTCAAGATCATTCTTCAATCATCCATTGATGAGAATAAGCTGCATCTGCCAAAGAAATTCCTGAAGAAGCATGGCAACGAGC TCGGAACAAAAGTGCTTTTCAAAGTTCCGGATGGAAAAACCTGGGAGATCGTGGTTCGAAAGACGTACGACGGAGTCACATGGTTTAGCCAGGGCTGGTC AGCATTCGCAGCCCGCTACTCGATCCGCTATGCCTACCTGTTGGTGTTCAAGTACAAAGGCGATTCCTGCTTCCATGTTCGGATCTACGCTCCAAATGCT TGCGAAATCGTTTACCCAGCTGGTGATGATCATAGGCCTCCAAATGTGGCAGTGAAAAATGAAGTTGGGGAGGGATCAGGTTCAGGGGTTAGAATTGAAA CAATAGTTGCTACCAGCTTTAAACAGATCCGCAATAAAGCTACAGGATCAGAGAAGCGGACCATTAATGCTGCGATGGAGCTGAGTCTGAAGAATCCGTC ATGGACGCTGGTGATTAAACCGTACAACTTCGTACTCCCTGTCGGATACGTTCCCGGAAAATTTGCGAATGCTCATCTGGGACCAGAGTGCAGCTACATG ATAGTGTTCGATTCCCGCGGGAGCAAGGAGTGGGTGATTCGGCTCAACAGGAGGGAACGAGGAGGGCTGAATTTGGGACTTGGGTGGGGAGATTTCAGAG CTGAGAATGATCTGAGGCCGGGAGACGTTTGCCTTTTTGAGCTGGTGAATCCCGGGGAGTTTTTCATGAAATCTCACATCTTTCGCGTTTCGGATCATTG A
AA sequence Show only first row Show all	>Lus10041961 pacid=23153990 polypeptide=Lus10041961 locus=Lus10041961.g ID=Lus10041961.BGIv1.0 annot-version=v1.0 MGSRNFFKIILQSSIDENKLHLPKKFLKKHGNELGTKVLFKVPDGKTWEIVVRKTYDGVTWFSQGWSAFAARYSIRYAYLLVFKYKGDSCFHVRIYAPNA CEIVYPAGDDHRPPNVAVKNEVGEGSGSGVRIETIVATSFKQIRNKATGSEKRTINAAMELSLKNPSWTLVIKPYNFVLPVGYVPGKFANAHLGPECSYM IVFDSRGSKEWVIRLNRRERGGLNLGLGWGDFRAENDLRPGDVCLFELVNPGEFFMKSHIFRVSDH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10041961 [exp]	0	1
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Lus10009214 [exp]	1.7	0.8333
AT5G02440			unknown protein		Lus10000246 [exp]	3.3	0.7748
AT1G63820			CCT motif family protein (.1)		Lus10024655 [exp]	5.1	0.7691
AT2G37730			Protein of unknown function (D...		Lus10030153 [exp]	8.7	0.7556
AT1G71080			RNA polymerase II transcriptio...		Lus10042948 [exp]	9.2	0.7673
AT4G11880	MADS	AGL14	AGAMOUS-like 14 (.1)		Lus10006716 [exp]	10.1	0.8136
AT5G01910			unknown protein		Lus10035364 [exp]	11.3	0.7648
AT4G27590			Heavy metal transport/detoxifi...		Lus10032924 [exp]	11.4	0.7773
AT3G48670		RDM12, IDN2	RNA-DIRECTED DNA METHYLATION 1...		Lus10002305 [exp]	13.3	0.8199
					Lus10015620 [exp]	13.8	0.7965

Compare expression of checked genes

Lus10041961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.