Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80530 691 / 0 Major facilitator superfamily protein (.1) AT4G34950 366 / 4e-120 Major facilitator superfamily protein (.1) AT2G16660 339 / 5e-110 Major facilitator superfamily protein (.1) AT3G01930 334 / 2e-107 Major facilitator superfamily protein (.1.2) AT5G14120 331 / 2e-106 Major facilitator superfamily protein (.1) AT5G50520 316 / 5e-101 Major facilitator superfamily protein (.1) AT5G50630 316 / 5e-101 Major facilitator superfamily protein (.1) AT2G28120 249 / 5e-75 Major facilitator superfamily protein (.1) AT2G39210 245 / 4e-73 Major facilitator superfamily protein (.1) AT1G74780 236 / 2e-70 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017971 [exp] 1088 / 0 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 895 / 0 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 887 / 0 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 650 / 0 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 351 / 3e-114 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10025053 [exp] 347 / 1e-112 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 337 / 2e-108 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10035203 [exp] 337 / 2e-108 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025123 [exp] 324 / 1e-103 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G012300 [exp] 839 / 0 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 815 / 0 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 736 / 0 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 367 / 1e-120 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 356 / 3e-116 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.012G098900 [exp] 345 / 1e-111 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.005G112400 [exp] 336 / 9e-109 AT4G34950 618 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 321 / 2e-102 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 320 / 7e-102 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.009G006400 [exp] 244 / 2e-73 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10041962 pacid=23153939 polypeptide=Lus10041962 locus=Lus10041962.g ID=Lus10041962.BGIv1.0 annot-version=v1.0 ATGCCGAACATCGTGGTGAAAGGAGGCAGCCGGCCGCCATGGGTGGGATTGGCAGCAGCTGTGTGGGTCGAGGTAGCTGCCGGAAACGGCTACACATTCC CACTCTACTCCCCGGCGCTCAAAGCCGCCATGGGACTCAACCAGCAGCAGATCACAATGCTCGGTGTCGCCAACGATATTGGGGAGAGCGTCGGGTTGCT CCCTGGCATCGCCTGCAACAAGTTCCCTCCTTGGGCTGTTCTCTTCGTCGGCGTCGTCATGTGCTTCTTGGGCTACGGCGTCCTCTGGCTCACCGTCAGC AACACCGTCGCCGGTCTGCCTTATTGGCTGGTATGGATCGCGCTTGTCATTGGTACAAATAGCAATGCATGGTTTGGCACAGCCGTGCTCGTAACTAATA TGAGAAACTTTCCCCTTAGCAGAGGAACTGTTTCTGGTATACTCAAAGGCTACGTTGGACTCTCTGCTGCAGTATATACGGTGTTATACAACATGGTGCT TAAGGACTCAGCTTCTGATTTTGTGTTGATGCTCACTCTTGGCATCCCAATTATATCTCTGGTGATGATGTATTTCATCCGGGTGTGTACTCCAGCTTCC GGGGAAGACTCTTCAGTGCATGTCCATTTTGTTTTTACTCAGGCTGCAAGCGTTCTGCTTGCCATATATCTTCTCACAACCACAATAGTGACTGATGTGT TTTCTATTTTCCTACACTTTTCCATTGGCAATGCTGCTTCCTACACGTTGGTTGCTATAATGGTCGTTATTATGGCCTCTCCTCTGGTGATTCCTATTAA AATGACTCTCTTCCCTGCCAACCCTAAGAAACGCAACTCACCGAATTCTGCCTCGGACCTTCCTGCTCTTGCTGAAGGTGGTGAATCGACCCCCACGGAG CCTTTGTTAGAAAAATCGTCATCGGCGGCCTATCTTGGGAGTTTCCTAGAGAATGAGGATACTTCGGATGTTGATACACTTCTTGCTGTCGGGGAGGGAG CTGTGAAGAAGAAAAGGAAACCCAAGAGAGGCGAGGACTTCAGATTTCGCGAGGCTCTGGTGAAAGCTGATTTCTGGCTTCTTTGGGTGGTATACTTTCT TGGAGTTGGTTCAGGAGTTACTGTCCTCAATAACTTGGCACAGATCGGGATTGCATTTGGACTTAATGACACAACAATGCTGCTTGCCCTCTTCAGCTTC TGTAATTTTGCCGGACGCCTTGGATCTGGTGTTGTATCCGAGTACTTTGTCAGGTCAAGCACAACTCCTAGAACTGTGTGGATGACAGTTGCACAAGCAA TCATGGTCGTAATTTTTATCATGTTTGCTTTTGCCGTCAAGGGCGTTCTCTATGCAGCAACTGCTCTCGTCGGTGTCTGTTACGGAATTCTCTATTCTGT GATGGTTCCAACTGTTTCCGAGCTCTTCGGCCTGAGACATTTTGGTATCATTTACAACTTTGTGCTATTAGGAAACCCTGTTGGTGCCCTTCTCTTCTCA GGAGGACTCGCCGGAACAATGTATGATATTGAAGCTTCTAAGCAAGGAAGCTCCACCTGTGTCGGCCCTGATTGCTTTAAAGTGACATTCCTGGCTCTTG CTGCCCTATGTGGACTGGGAACTCTCTTGAGCATAATATTGACCATGAGAATAAGGCCCGTTTACCAAATGCTCTATTCTGGGGGCTCTTTCCGCCTGGC ACAAAGTTCTGGCCATTGA
AA sequence Show only first row Show all	>Lus10041962 pacid=23153939 polypeptide=Lus10041962 locus=Lus10041962.g ID=Lus10041962.BGIv1.0 annot-version=v1.0 MPNIVVKGGSRPPWVGLAAAVWVEVAAGNGYTFPLYSPALKAAMGLNQQQITMLGVANDIGESVGLLPGIACNKFPPWAVLFVGVVMCFLGYGVLWLTVS NTVAGLPYWLVWIALVIGTNSNAWFGTAVLVTNMRNFPLSRGTVSGILKGYVGLSAAVYTVLYNMVLKDSASDFVLMLTLGIPIISLVMMYFIRVCTPAS GEDSSVHVHFVFTQAASVLLAIYLLTTTIVTDVFSIFLHFSIGNAASYTLVAIMVVIMASPLVIPIKMTLFPANPKKRNSPNSASDLPALAEGGESTPTE PLLEKSSSAAYLGSFLENEDTSDVDTLLAVGEGAVKKKRKPKRGEDFRFREALVKADFWLLWVVYFLGVGSGVTVLNNLAQIGIAFGLNDTTMLLALFSF CNFAGRLGSGVVSEYFVRSSTTPRTVWMTVAQAIMVVIFIMFAFAVKGVLYAATALVGVCYGILYSVMVPTVSELFGLRHFGIIYNFVLLGNPVGALLFS GGLAGTMYDIEASKQGSSTCVGPDCFKVTFLALAALCGLGTLLSIILTMRIRPVYQMLYSGGSFRLAQSSGH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G80530			Major facilitator superfamily ...		Lus10041962 [exp]	0	1
AT1G80530			Major facilitator superfamily ...		Lus10017971 [exp]	1.0	0.9763
AT5G65720		ATNIFS1, NIFS1 ...	NITROGEN FIXATION S HOMOLOG 1,...		Lus10011572 [exp]	1.4	0.9296
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10030726 [exp]	1.7	0.9108
AT4G11090		TBL23	TRICHOME BIREFRINGENCE-LIKE 23...		Lus10033950 [exp]	4.5	0.9096
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Lus10023929 [exp]	6.3	0.8998
AT1G79420			Protein of unknown function (D...		Lus10001843 [exp]	7.7	0.8965
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10030301 [exp]	9.0	0.8725
AT4G22730			Leucine-rich repeat protein ki...		Lus10028916 [exp]	9.5	0.8833
AT5G08200			peptidoglycan-binding LysM dom...		Lus10017399 [exp]	11.7	0.8894
AT1G79420			Protein of unknown function (D...		Lus10001755 [exp]	13.1	0.8873

Compare expression of checked genes

Lus10041962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.