Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16390 928 / 0 DMS1, CHR35, DRD1 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) AT2G21450 773 / 0 CHR34 chromatin remodeling 34 (.1) AT1G05490 298 / 5e-85 CHR31 chromatin remodeling 31 (.1) AT3G24340 287 / 5e-82 CHR40 chromatin remodeling 40 (.1) AT5G20420 273 / 2e-76 CHR42 chromatin remodeling 42 (.1) AT3G42670 266 / 2e-74 CLSY1, CLSY, CHR38 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) AT3G32330 223 / 2e-65 DNA repair protein-related (.1) AT3G32280 181 / 4e-49 ATP-dependent helicase family protein (.1) AT3G31900 153 / 5e-40 ATP-dependent helicase family protein (.1) AT5G63950 126 / 2e-29 CHR24 chromatin remodeling 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017973 [exp] 1601 / 0 AT2G16390 994 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10042070 [exp] 897 / 0 AT2G16390 833 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Lus10003003 [exp] 299 / 3e-86 AT1G05490 579 / 0.0 chromatin remodeling 31 (.1) Lus10011033 [exp] 295 / 8e-84 AT1G05490 590 / 0.0 chromatin remodeling 31 (.1) Lus10040956 [exp] 283 / 9e-80 AT5G20420 1316 / 0.0 chromatin remodeling 42 (.1) Lus10009840 [exp] 280 / 4e-79 AT5G20420 1283 / 0.0 chromatin remodeling 42 (.1) Lus10040136 [exp] 194 / 5e-51 AT1G05490 430 / 2e-131 chromatin remodeling 31 (.1) Lus10001090 [exp] 113 / 2e-27 AT1G05490 202 / 6e-59 chromatin remodeling 31 (.1) Lus10015690 [exp] 119 / 5e-27 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120700 [exp] 1080 / 0 AT2G16390 938 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.004G159000 [exp] 966 / 0 AT2G16390 811 / 0.0 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.014G050200 [exp] 299 / 7e-86 AT1G05490 592 / 0.0 chromatin remodeling 31 (.1) Potri.008G073500 [exp] 285 / 2e-80 AT3G42670 1120 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.004G159100 [exp] 230 / 5e-70 AT2G16390 210 / 1e-63 DEFECTIVE IN RNA-DIRECTED DNA METHYLATION 1, DEFECTIVE IN MERISTEM SILENCING 1, SNF2 domain-containing protein / helicase domain-containing protein (.1) Potri.010G183832 [exp] 166 / 4e-44 AT3G42670 656 / 0.0 CLASSY 1, CLASSY1, chromatin remodeling 38 (.1) Potri.003G110100 [exp] 125 / 5e-29 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.007G102800 [exp] 122 / 4e-28 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G066600 [exp] 121 / 7e-28 AT2G18760 353 / 7e-104 chromatin remodeling 8 (.1) Potri.010G099000 [exp] 118 / 4e-27 AT2G02090 1061 / 0.0 CHROMATIN REMODELING 19, SNF2 domain-containing protein / helicase domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00176 [flax] [poplar] SNF2_N SNF2 family N-terminal domain CL0023 [flax] [poplar] P-loop_NTPase PF00271 [flax] [poplar] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041963 pacid=23153558 polypeptide=Lus10041963 locus=Lus10041963.g ID=Lus10041963.BGIv1.0 annot-version=v1.0 ATGGTGGATTACTCTGATCCGTTTGCTGCATCCAATACGATCCAAATGCTTGAATCTGGAGTCTATGGAAGTGTTACTGAAGAAATCAAAGCTTTAGCTA CGCACAAACTTTGGGTTCTGCAACCCTATCTGCAAAAGTATCCAGCGCTTTCTAATATATTTTGGGACGAAGAGAAGATCTCAGATGAAGATGCTGCAGA CGTACAGACTAACTTTGTTGATCTTGACGATGCAAATGTGGTACATAGTGCTCCAGCAGCAGCAGATCCGATTGTAATCATTGACTCGGATGATGAAGAC AATCAAGATCTGCGGGTGGTTCTTCCTTTCCAGGAGGTGGCCTTGCCAAAGCCTGATGGACAATTTGTCACCGAAAAGGAGTATAATGACCTTCAAATGG ATATCAAGCAACGAGGAATGCCAACAAGGGTTGGTGTGGAACTGGGAGGCAAGAAAGAACGCGAGACCAAGAAAGAACGTGAGACCAAGAAAGAACTCGA TACAAAGAACGACGGAGGGACTTATGTCGGTGTCACCGATGATGACAATGACCATTCTGAGACTAATGACGACGGTCTCGGTGATATTTGGCAAGAAATG TCCCTGGCCTTGGAATGTGGCAAGGAGGTAGCAGAGCATCATTCATCTGATGATTACATAGAAGAGGATGATGAAGCATGTGATCATTCTTTCATCTTAA AGGATGATATTGGTTATGTTTGCCGCATCTGTGGAGTTATCGAGCGAGGCATTGAGAGCATAATTGAAGTGCAATTTTATAAGGCAAAAAAGAGCACGAG AACCTCAATCAGTTCGCGGAATGCAAACCGAGATTCAAATGACGGAGTCGGAATTCAACTGTCCGAAGAAGACCTGATGGTGACTGATATCTATGCCCAC CCAAGACACAAGAAAAAGATGAAACCTCATCAGGTGGAGGGTTTCAACTTTCTTTGCAGTAACCTAGTAGCAGATAATCCTGGAGGCTGCATATTGGCTC ATGCACCTGGGTCGGGGAAGACATTTATGATTATCAGTTTCATGCAAAGCTTTCTTGCCAAATATCCTCACGGCAGACCTTTGGTGGTTCTCCCAAAAGG GATATTAACTACATGGAAGAAGGAGTTTCAAACATGGCAAGTCGAAGATATCCCATTGTACGACTTTTATAGCGTGAAAGCTGATAGCAGACAGCAGCAG CTGGAAGTTTTAAAGCAGTGGGTGGAGGAGAAGAGTATTCTCTTCTTAGGTTACAAACAGTTCTCTGCTATCATTTGCGACAGTGGAAACAGCACAACTG CAGCTAGTTGTCGAGAGATATTGCTCAAAAGACCGTCGATTCTCATTTTGGACGAAGGGCACACTCCTAGAAACGAAAATACTGACGTTTTGCAATCTCT CGCCAAAGTGCAGACTCCTCGGAAGGTTGTGCTCTCTGGAACCCTGTACCAGAATCACGTAAAGGAGGTATTCAACGTGTTGAATCTTGTTCGTCCGAAG TTTCTGAGGTTGGACGATTCGAAAGGCATTGTGAAGCGCATCTTGAGTAAAGTGAACATCTCGGGGCTCAAGAAGAACATTAAATCCGGTGTCGATGCGA CATTTTACGAACTGGTGGAGCACACGATCCAGAAAGATCCCGATTTCAAAAGGAAAGTGTCGATCATCCACGACCTCCGCGAGATGACTAGCAAGGTCCT GCACTATTATAAAGGAGATTTCTTGGACGAGCTTCCTGGACTGGTCGATTTCACTGTGGTACTTAACTTAAGTAAAAGGCAGAAGCACGAGGTCGAAAAG TTGAAGAAACTGTCGAGAAAGTTTAAACGAAGTGCCGTCGGAAGTGCTGTTTATCTCCATCCGAAACTGAACTCGTTCCCTGACAATGTTTCTGTTACAG ATGGTATGATGGACGAGCTATTAGGTAGCTTGAACTTGAGAGATGGGGTGAAAGCGAGCTTCTTTCTCAGTATGTTACGTTTATGCGAGGCGTCGGGGGA GAAGCTACTGGTATTCAGTCAGTACCTAACCCCATTGAAGTTTCTCGAGAGACTTGTGGCGAGGGAGAAAGGTTGGGCGTTAGGGAAGGAAATCTTTGTG ATCTCGGGTGATACGAGTTCCGAGCAGAGAGAGTTGTCGATGGATCGGTTCAACAACTCGTCCGATGCAAGAGTCTTCTTCGGGTCGATTAAGGCCTGCG GAGAGGGGATTTCCTTGGTAGGTGCGTCTCGAATCATAATATTGGATGTCCACCTTAATCCTTCCGTGACTCGCCAGGCAATAGGGCGAGCCTTCCGGCC CGGTCAGCTGAAGAAAGTATACGCTTATCGTTTGGTGGCTGCTGATTCGCCCGAGGAGGAAGATCACAGCACTTGCTTCAGGAAGGAGGCGATCGCGAAA ATGTGGTTCGAGTGGAACGAGTATTGTGGTTACCAAAATTTCGAAGTGGAACAAATTGACTTGACCGAGTCTGGTGATCCGTTCTTGGACAGTCCTATGG TGAAGGAAGATGTTAGGGTTCTGTACAAAAGGTTATCATCTATCTACCCTCAATGTTATTTGCATCAAAAGAATCTACTCGTCAAAGTTTTGCTTACAAG TGATTTCTTTCGAATTTCAGGTAACCGTGATCGTCAAGCAAATCGGACCGTCCAATCGAGTTTATTGTCCATAGGAGGAGCAGATTTTATGAACTGTGGA CAATTTTTTGTTAAATCTATGCTCTGTCTGTATATAGATGGAACGAAAGTGCTGGAATGTGTAGATTTTCCTTTTGGTTAA
AA sequence Show only first row Show all	>Lus10041963 pacid=23153558 polypeptide=Lus10041963 locus=Lus10041963.g ID=Lus10041963.BGIv1.0 annot-version=v1.0 MVDYSDPFAASNTIQMLESGVYGSVTEEIKALATHKLWVLQPYLQKYPALSNIFWDEEKISDEDAADVQTNFVDLDDANVVHSAPAAADPIVIIDSDDED NQDLRVVLPFQEVALPKPDGQFVTEKEYNDLQMDIKQRGMPTRVGVELGGKKERETKKERETKKELDTKNDGGTYVGVTDDDNDHSETNDDGLGDIWQEM SLALECGKEVAEHHSSDDYIEEDDEACDHSFILKDDIGYVCRICGVIERGIESIIEVQFYKAKKSTRTSISSRNANRDSNDGVGIQLSEEDLMVTDIYAH PRHKKKMKPHQVEGFNFLCSNLVADNPGGCILAHAPGSGKTFMIISFMQSFLAKYPHGRPLVVLPKGILTTWKKEFQTWQVEDIPLYDFYSVKADSRQQQ LEVLKQWVEEKSILFLGYKQFSAIICDSGNSTTAASCREILLKRPSILILDEGHTPRNENTDVLQSLAKVQTPRKVVLSGTLYQNHVKEVFNVLNLVRPK FLRLDDSKGIVKRILSKVNISGLKKNIKSGVDATFYELVEHTIQKDPDFKRKVSIIHDLREMTSKVLHYYKGDFLDELPGLVDFTVVLNLSKRQKHEVEK LKKLSRKFKRSAVGSAVYLHPKLNSFPDNVSVTDGMMDELLGSLNLRDGVKASFFLSMLRLCEASGEKLLVFSQYLTPLKFLERLVAREKGWALGKEIFV ISGDTSSEQRELSMDRFNNSSDARVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQLKKVYAYRLVAADSPEEEDHSTCFRKEAIAK MWFEWNEYCGYQNFEVEQIDLTESGDPFLDSPMVKEDVRVLYKRLSSIYPQCYLHQKNLLVKVLLTSDFFRISGNRDRQANRTVQSSLLSIGGADFMNCG QFFVKSMLCLYIDGTKVLECVDFPFG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Lus10041963 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Lus10021898 [exp]	1.0	0.9237
AT1G69060			Chaperone DnaJ-domain superfam...		Lus10036825 [exp]	1.4	0.9137
AT1G51310			transferases;tRNA (5-methylami...		Lus10038747 [exp]	2.4	0.8605
AT2G17020			F-box/RNI-like superfamily pro...		Lus10012518 [exp]	3.9	0.8645
AT2G36720			Acyl-CoA N-acyltransferase wit...		Lus10027738 [exp]	4.9	0.8942
AT4G19540		INDH, INDL	IND1(iron-sulfur protein requi...		Lus10025895 [exp]	4.9	0.8178
AT5G44150			unknown protein		Lus10018632 [exp]	5.7	0.8482
AT5G27240			DNAJ heat shock N-terminal dom...		Lus10004129 [exp]	5.9	0.8514
AT1G74120			Mitochondrial transcription te...		Lus10021146 [exp]	8.0	0.8311
AT5G41580			RING/U-box superfamily protein...		Lus10024682 [exp]	10.2	0.8364

Compare expression of checked genes

Lus10041963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.