Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33980 256 / 2e-85 ATNUDT22 nudix hydrolase homolog 22 (.1) AT1G28960 255 / 2e-85 ATNUDX15, ATNUDT15 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) AT5G45940 231 / 1e-76 AtNUDX11, ATNUDT11 Arabidopsis thaliana nudix hydrolase homolog 11, nudix hydrolase homolog 11 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025424 [exp] 280 / 5e-95 AT1G28960 379 / 3e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Lus10015301 [exp] 271 / 2e-91 AT1G28960 384 / 2e-135 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G053100 [exp] 278 / 2e-94 AT1G28960 387 / 2e-136 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.011G063300 [exp] 274 / 4e-93 AT1G28960 379 / 1e-133 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053200 [exp] 246 / 3e-82 AT1G28960 279 / 5e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5) Potri.004G053300 [exp] 223 / 3e-73 AT2G33980 271 / 1e-91 nudix hydrolase homolog 22 (.1) Potri.016G121500 [exp] 197 / 1e-62 AT1G28960 234 / 2e-76 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15, nudix hydrolase homolog 15 (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [flax] [poplar] NUDIX PF00293 [flax] [poplar] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Lus10041965 pacid=23153635 polypeptide=Lus10041965 locus=Lus10041965.g ID=Lus10041965.BGIv1.0 annot-version=v1.0 ATGAGTTCTCATCATGGATCGAACAAGTTGCTAGCTTTAGCTCATGAGCAGCTCGGCCAATACAACAACTCCAGGCGGGTGGCCATGGAGGAGGAAACTG CTGCAGGTTATAACAAAGTGGTAGCCCTTACCCCGACCGGTTTCCAAGAATCGGTCACCCAAACAGTGTTCGAACACAAAAGAACAGCATCGGCAGCAGT CCTCGTGTGCATCTTTGAAGATGATCTCGGCGAGTTACGAGTCATTTTGACTATAAGATCCGGGATTGTTTCCACTCATCCAGGTGAAGTTTCATTGCCT GGTGGGAGAAGGGAGGAGGGAGACAAGGATGATGTGGAAACAGCAATAAGGGAAGCCGAAGAGGAAATTGGATTGGATCCTTCTCTAGTTGATGTTATTA CAGTTCTTGAACCCTTCTTCTGTAAGCATACTCCGAAAGTGAGCCCGGTTGTAGGCATCCTAAAGAGCAGGAAAGCATTCAAAGCAACACTCAATCCAGC TGAAGTTGAAGCACTCTTCGATGCACCTCTTCAAATGTTCATCAATGATGAACATCGAAGAATTGAAGAGAGAGAATGGAAGGGTGAGAAATATTTGCTA CCTTGTTTCGACTACAAAGCTGATGGAGACAGGAAGTATTCAATATGGGGATTAACAGCTGCCATTCTCATCAAAGTTGCATCAATAGTCTATCAACGAC CTCCACCATTTCCGGAGCGGAACCCTAGCTTCATTTTTCACCGACTGTAA
AA sequence Show only first row Show all	>Lus10041965 pacid=23153635 polypeptide=Lus10041965 locus=Lus10041965.g ID=Lus10041965.BGIv1.0 annot-version=v1.0 MSSHHGSNKLLALAHEQLGQYNNSRRVAMEEETAAGYNKVVALTPTGFQESVTQTVFEHKRTASAAVLVCIFEDDLGELRVILTIRSGIVSTHPGEVSLP GGRREEGDKDDVETAIREAEEEIGLDPSLVDVITVLEPFFCKHTPKVSPVVGILKSRKAFKATLNPAEVEALFDAPLQMFINDEHRRIEEREWKGEKYLL PCFDYKADGDRKYSIWGLTAAILIKVASIVYQRPPPFPERNPSFIFHRL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G33980		ATNUDT22	nudix hydrolase homolog 22 (.1...		Lus10041965 [exp]	0	1
AT2G20190		ATCLASP	CLIP-associated protein (.1)		Lus10029708 [exp]	1.4	0.8440
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Lus10024389 [exp]	4.0	0.7654
AT5G45140		NRPC2	nuclear RNA polymerase C2 (.1)		Lus10011322 [exp]	4.2	0.7948
					Lus10021794 [exp]	6.6	0.7383
AT4G25420		AT2301, GA5, AT...	GA REQUIRING 5, ARABIDOPSIS TH...		Lus10015016 [exp]	9.2	0.7805
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10042744 [exp]	9.6	0.7830
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10030179 [exp]	14.3	0.7772
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10029707 [exp]	15.2	0.7777
AT1G71890		SUC5, ATSUC5	SUCROSE-PROTON SYMPORTER 5, Ma...		Lus10018914 [exp]	16.2	0.7610
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Lus10005139 [exp]	17.3	0.7466

Compare expression of checked genes

Lus10041965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.