Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55670 209 / 1e-70 PSAG photosystem I subunit G (.1) AT1G30380 44 / 5e-06 PSAK photosystem I subunit K (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017974 [exp] 285 / 7e-101 AT1G55670 209 / 1e-70 photosystem I subunit G (.1) Lus10017476 [exp] 221 / 1e-75 AT1G55670 208 / 3e-70 photosystem I subunit G (.1) Lus10028806 [exp] 218 / 5e-74 AT1G55670 214 / 1e-72 photosystem I subunit G (.1) Lus10012086 [exp] 45 / 2e-06 AT1G30380 174 / 3e-57 photosystem I subunit K (.1) Lus10007399 [exp] 41 / 4e-05 AT1G30380 174 / 1e-57 photosystem I subunit K (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G471900 [exp] 198 / 3e-66 AT1G55670 209 / 3e-70 photosystem I subunit G (.1) Potri.011G168700 [exp] 195 / 4e-65 AT1G55670 206 / 5e-69 photosystem I subunit G (.1) Potri.006G254200 [exp] 44 / 2e-06 AT1G30380 176 / 3e-58 photosystem I subunit K (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01241 [flax] [poplar] PSI_PSAK Photosystem I psaG / psaK
Representative CDS sequence Show only first row Show all	>Lus10041966 pacid=23153855 polypeptide=Lus10041966 locus=Lus10041966.g ID=Lus10041966.BGIv1.0 annot-version=v1.0 ATGGCGACATCAACACTGTTCCTCTCCCCTATCTTCAAAACCCACCACTCTGGCGTTTCCTTCCTCCGCCGGGGACCCAACGCAGCCGCCTTCCAATCAC GGCGGCGGAGCACGGTGGCGGTGAAGGCGGAGCTGAACCCGTCGCTGGTGATAAGCTTGAGTACAGGGCTGTCTCTGTTCCTGGGGAGGTTCGTGTTCTT CAACTTCCAGAGGGAGAACGTGGCGAAACAGGGGCTACCGGAGCAGAACGGGAAGACCCATTTCGAGGCCGGAGATTCTCGTGCCAAAGAATATGTCAGC CTCCTGAAATCTAACGACCCGGTCGGGTTCAACATCGTTGATGTTCTTGCTTGGGGTTCCATTGGCCATATTGTTGCTTACTACATCTTGGCCACCACTA GCAACGGCTATGACCCCAAGTTCTTTTGA
AA sequence Show only first row Show all	>Lus10041966 pacid=23153855 polypeptide=Lus10041966 locus=Lus10041966.g ID=Lus10041966.BGIv1.0 annot-version=v1.0 MATSTLFLSPIFKTHHSGVSFLRRGPNAAAFQSRRRSTVAVKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDSRAKEYVS LLKSNDPVGFNIVDVLAWGSIGHIVAYYILATTSNGYDPKFF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55670		PSAG	photosystem I subunit G (.1)		Lus10041966 [exp]	0	1
					Lus10024084 [exp]	2.4	0.9719
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10035864 [exp]	2.8	0.9774
AT4G16410			unknown protein		Lus10003907 [exp]	4.9	0.9637
AT2G42220			Rhodanese/Cell cycle control p...		Lus10021032 [exp]	5.7	0.9663
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10011913 [exp]	6.2	0.9698
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10007362 [exp]	8.5	0.9597
AT2G20260		PSAE-2	photosystem I subunit E-2 (.1)		Lus10022846 [exp]	9.2	0.9611
AT1G22130	MADS	AGL104	AGAMOUS-like 104 (.1)		Lus10022505 [exp]	9.8	0.9512
AT1G52230		PSAH2, PSAH-2, ...	PHOTOSYSTEM I SUBUNIT H-2, pho...		Lus10025798 [exp]	10.2	0.9639
AT1G30380		PSAK	photosystem I subunit K (.1)		Lus10007399 [exp]	12.0	0.9577

Compare expression of checked genes

Lus10041966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.