Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42690 451 / 5e-158 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 258 / 2e-82 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 250 / 3e-79 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 229 / 7e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 226 / 7e-70 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 228 / 1e-69 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 221 / 5e-67 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 179 / 7e-51 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 173 / 3e-49 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 167 / 9e-47 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017975 [exp] 686 / 0 AT2G42690 524 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 254 / 2e-81 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 248 / 1e-79 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 246 / 1e-77 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 216 / 2e-66 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 198 / 2e-59 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 185 / 6e-54 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 184 / 6e-54 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 179 / 1e-50 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101800 [exp] 492 / 3e-174 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 297 / 8e-98 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 296 / 3e-97 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 238 / 2e-73 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 236 / 1e-72 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G054600 [exp] 227 / 1e-70 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.002G044700 [exp] 229 / 4e-70 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G026400 [exp] 207 / 9e-63 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 197 / 5e-59 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 187 / 6e-54 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10041967 pacid=23153776 polypeptide=Lus10041967 locus=Lus10041967.g ID=Lus10041967.BGIv1.0 annot-version=v1.0 ATGGATTCTTCCACTTCCGACGAGCCAACATGGCCGGAGATACTAGGCAGCAACTCCTGGAGCAACCTCCTCGACCCACTCAATCTCACCCTCCGGAACC TCATCCTCCGATGCGGCGACTTCTGCCAGGCCACCTACGACGCCTTCAACAACGACTCCAATTCCAAGTTCGCCGGCGCCAGCCGATACGGCAAGTCTAA TTTCTTCCACAAGGTCATGCTCCAAGATCCCGACAACTACCGAGCGTTCCGGCAGCTTTCCTCCTCCACTCGCTCGCCCGCCCCCCCCTCGCCCCCCCGC GAAAACGACCCCTGGCACCGCAAATCAAACTGGATTGGCTACGTCGCCGTCACCTCCGATGAACAGGCCGCCGCCCTCGGCCGCCGCGAGATCTACGTCG CGTTCCGCGGCACCAGCAGGAACTACGAGTGGGTCAACCTCCTCGGCGCCCAACTCACCTCTGCTCGCGAACTGCTCAAAACCACCGACGCATCCGTCGC CGATCCCAAAGTGATGCTGGGCTGGCTGACGATGTACGTTTCCGACGAGCCGAGCTCCCCATTTACGAAGCAGAGCGCCAGATCCCAGCTCCTGGCGGCC ATCAACCGCCTTCGCGAGAAGTACGCCGGTGAGGAACTTAGCGTAATTCTGACCGGACACAGCCTGGGGGCTTGTCTAGCAATCCTGGCGGCATTCGACA TCGCCGAAAACGGCGCCGTTGGGGTGGAAACCCCGGTGACGGCGATCGTTTTCGGGAGCCCGATGGTCGGAAACAGAGCATTCCAAGACAGAGTGAAAAC CCACCGGAATCTGAGAATCCTCCACGTACGGAACAAGATCGACCTGCTTACTCACTACCCAGGGAAGTTGCTAGGGTATGTGGACCCGGGGACAGAGGAG CTAGTGATCGACACGAGGAAGTCGCCGAACCTGAAGCAGTCGACGAATACAGGGGACTGGCACAATTTGCAGGGTATGCTGCACGTGGTCGCGGGGTGGA ACGGTGAAGACAGGGGGTTCGAAATGAAAGTGAAGAGAAGCTTGGCTTTGGTGAACAAGTCGAGCGAGTTCTTGAAGGAGGAGTATTTGGTGCCTGGTTC TTGGTGGGTGGAGAAGAACAAAGGGATGGTTAGGGATGAAGATGGAGAGTGGGCTCTGGCTCCTCCTGATGATGAAGATCTTCCCGTTCCTCCCGGTGAC GACGATGATTTATAG
AA sequence Show only first row Show all	>Lus10041967 pacid=23153776 polypeptide=Lus10041967 locus=Lus10041967.g ID=Lus10041967.BGIv1.0 annot-version=v1.0 MDSSTSDEPTWPEILGSNSWSNLLDPLNLTLRNLILRCGDFCQATYDAFNNDSNSKFAGASRYGKSNFFHKVMLQDPDNYRAFRQLSSSTRSPAPPSPPR ENDPWHRKSNWIGYVAVTSDEQAAALGRREIYVAFRGTSRNYEWVNLLGAQLTSARELLKTTDASVADPKVMLGWLTMYVSDEPSSPFTKQSARSQLLAA INRLREKYAGEELSVILTGHSLGACLAILAAFDIAENGAVGVETPVTAIVFGSPMVGNRAFQDRVKTHRNLRILHVRNKIDLLTHYPGKLLGYVDPGTEE LVIDTRKSPNLKQSTNTGDWHNLQGMLHVVAGWNGEDRGFEMKVKRSLALVNKSSEFLKEEYLVPGSWWVEKNKGMVRDEDGEWALAPPDDEDLPVPPGD DDDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	0	1
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	1.0	0.9055
AT5G44005			unknown protein		Lus10003609 [exp]	3.5	0.8486
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	4.5	0.8417
AT1G68740		PHO1;H1	EXS (ERD1/XPR1/SYG1) family pr...		Lus10034400 [exp]	8.2	0.8063
AT1G71140			MATE efflux family protein (.1...		Lus10041053 [exp]	11.0	0.8174
AT2G12400			unknown protein		Lus10008813 [exp]	11.6	0.8687
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Lus10029270 [exp]	12.4	0.7944
AT1G71900			Protein of unknown function (D...		Lus10019952 [exp]	14.3	0.8195
AT5G14370			CCT motif family protein (.1)		Lus10022311 [exp]	18.0	0.8190
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Lus10026117 [exp]	18.2	0.7865

Compare expression of checked genes

Lus10041967 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.