Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39120 440 / 4e-155 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT3G02870 94 / 3e-22 VTC4 Inositol monophosphatase family protein (.1.2.3) AT1G31190 89 / 8e-20 IMPL1 myo-inositol monophosphatase like 1 (.1) AT5G09290 53 / 1e-07 Inositol monophosphatase family protein (.1) AT5G63980 46 / 3e-05 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G64000 45 / 3e-05 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63990 42 / 0.0004 Inositol monophosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017976 [exp] 564 / 0 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Lus10027343 [exp] 100 / 4e-24 AT3G02870 419 / 5e-149 Inositol monophosphatase family protein (.1.2.3) Lus10018305 [exp] 86 / 3e-18 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10039046 [exp] 81 / 1e-16 AT3G02870 323 / 1e-110 Inositol monophosphatase family protein (.1.2.3) Lus10040601 [exp] 74 / 2e-14 AT1G31190 476 / 2e-169 myo-inositol monophosphatase like 1 (.1) Lus10037677 [exp] 47 / 7e-06 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10015663 [exp] 46 / 3e-05 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120600 [exp] 480 / 1e-171 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.010G156500 [exp] 101 / 9e-25 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.016G011000 [exp] 100 / 3e-24 AT3G02870 440 / 5e-158 Inositol monophosphatase family protein (.1.2.3) Potri.006G014900 [exp] 100 / 4e-24 AT3G02870 442 / 8e-159 Inositol monophosphatase family protein (.1.2.3) Potri.010G156300 [exp] 98 / 2e-23 AT3G02870 438 / 4e-157 Inositol monophosphatase family protein (.1.2.3) Potri.012G120492 [exp] 91 / 3e-20 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.015G120400 [exp] 87 / 9e-19 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.004G033200 [exp] 54 / 1e-07 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.005G063900 [exp] 44 / 0.0002 AT5G63980 529 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [flax] [poplar] Phospoesterase PF00459 [flax] [poplar] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Lus10041968 pacid=23153750 polypeptide=Lus10041968 locus=Lus10041968.g ID=Lus10041968.BGIv1.0 annot-version=v1.0 ATGCTTTCCCAATTACATTCCTGTTCCATCTCCCAACCCACCACTTCACAGCTCCTCCATCCTCACCCCGCCGCCGTTCGTAAACAAGTCCTCCCGCCGG CCACCGCCGCCGCCGCCGTCCCAATCCTCAAATTGGGATCTCCATTCCCTCTCTCATTCCGTCGCCCAACCAAGCGTGAAACTTCCTTGATGACCGCTAG TTCGCAGCTCTCTGATTGCTCCGTCCTCTCATCGACGCTGCTGGACGGATTCGCCGACCTCGCTGGCAGATTGGCAGATGCTTCCGGGGAAGTTATCCGG AAGTACTTCCGCAAGAAATTCGAAATCCTTGATAAGGATGACTTGAGTCCTGTGACGATTGCGGATAAAGCCGCTGAGGAAGCCATGGTTTCGATCATAT TGGAGAACTTTCCTTCTCATGCAATTTATGGAGAGGAGAATGGTTGGATATGTAAAGAGAAGTCTTCAGATTTCGTGTGGGTTTTGGATCCAATTGATGG GACTAAAAGCTTCATCACTGGGAAACCTCTCTTTGGAACGCTCATTTCTCTGCTGTTCAAGGGTAAACCAATACTTGGCGTGATTGATCAACCTATACTA AGAGAGCGATGGATCGGGATTGTTGGAATAAGAACGACATTGAACGGGGAGGAAATTTCAACACGAAGTTGTCAGCAACTTTCGCAAGCGTATTTGTACA CTACAAGCCCGCATCTTTTCAGCGGGGATGCTATCGATGCATTTGCTCGTGTCAGGAATAAGGTGAAAGTGCCGTTATACGGCTGTGACTGCTACGCTTA TGCCCTTTTGGCATCAGGATACGTAGATCTCGTGGTCGAATCCGGTCTCAAGCCATATGATTTTCTTGCCCTGATTCCCGTGATAGAAGGTGCTGGAGGC ACTGTTACTGATTGGAAAGGCAACCAACTTTCTTGGGAGGTGTCTGAAGACTCTCTAGCTCCAAGCTTCAACATTGTGGCAGCTGGAGATAAGCTTATAC AGCAGCAAGCTCTGGAGGCATTACAGTGGAGTTGA
AA sequence Show only first row Show all	>Lus10041968 pacid=23153750 polypeptide=Lus10041968 locus=Lus10041968.g ID=Lus10041968.BGIv1.0 annot-version=v1.0 MLSQLHSCSISQPTTSQLLHPHPAAVRKQVLPPATAAAAVPILKLGSPFPLSFRRPTKRETSLMTASSQLSDCSVLSSTLLDGFADLAGRLADASGEVIR KYFRKKFEILDKDDLSPVTIADKAAEEAMVSIILENFPSHAIYGEENGWICKEKSSDFVWVLDPIDGTKSFITGKPLFGTLISLLFKGKPILGVIDQPIL RERWIGIVGIRTTLNGEEISTRSCQQLSQAYLYTTSPHLFSGDAIDAFARVRNKVKVPLYGCDCYAYALLASGYVDLVVESGLKPYDFLALIPVIEGAGG TVTDWKGNQLSWEVSEDSLAPSFNIVAAGDKLIQQQALEALQWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39120		HISN7, IMPL2	HISTIDINE BIOSYNTHESIS 7, myo-...		Lus10041968 [exp]	0	1
AT2G20820			unknown protein		Lus10038583 [exp]	2.8	0.8195
AT1G07710			Ankyrin repeat family protein ...		Lus10015224 [exp]	5.7	0.7976
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10026753 [exp]	11.7	0.8274
AT3G62830		ATUXS2, UXS2, A...	UDP-GLUCURONIC ACID DECARBOXYL...		Lus10006510 [exp]	18.5	0.7653
AT1G71020			ARM repeat superfamily protein...		Lus10043471 [exp]	18.8	0.8095
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Lus10030359 [exp]	26.9	0.7266
AT5G21105			Plant L-ascorbate oxidase (.1....		Lus10025538 [exp]	27.2	0.7582
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10006391 [exp]	29.5	0.7971
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10003220 [exp]	29.8	0.7248
					Lus10011712 [exp]	38.8	0.7146

Compare expression of checked genes

Lus10041968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.