Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G21490 49 / 4e-07 LEA dehydrin LEA (.1) AT4G39130 47 / 1e-06 Dehydrin family protein (.1) AT1G20440 42 / 0.0002 AtCOR47, RD17, COR47 cold-regulated 47 (.1) AT3G50980 40 / 0.0003 XERO1 dehydrin xero 1 (.1) AT5G66400 39 / 0.0008 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017977 [exp] 221 / 6e-73 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158500 [exp] 54 / 2e-09 AT2G21490 56 / 3e-10 dehydrin LEA (.1) Potri.009G120100 [exp] 51 / 6e-08 AT4G39130 52 / 1e-08 Dehydrin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10041969 pacid=23153972 polypeptide=Lus10041969 locus=Lus10041969.g ID=Lus10041969.BGIv1.0 annot-version=v1.0 ATGGCGGAGTTGAGAGACGAGTACGGAAACAGAGTGGAGCTGACCGACCAACTGGGAAAACCCGTTGAGCTGAGAGACGAGCACGGCAACCCAGTTCACA TCAAAGGCGTAGCCATCCCGGCGGCTGACGCCGACGCTACCATTGCAGAGGCGCCGCTGCATCTGGTGCCGCCGCTAGTGGGTGGAGAACGGAGAGAAAA AGACCCGCTGGAAACTACTCATCATACTTTAGGCGATGCCCTCAAGTCCACTACTACCAACGATCCGACAACCGAAACGGCTGATGTCAGCATAGCTGGA CCTGCCGCTGCTGCCGGTACCGATACTGTTGGCCTCGTAAGCACTACTGTTATTGAGATGAAAGAAAGTGGTTATGCGCCAGAAATCCAGCGCTCTCCCA GCAGCACCAGCTCTTCTGGCACGTCGGAGGACGATGGGGAGGGAGGGAGGAGGAAGAAGAAAGGGCTGACTCAGAAGATCAAAGAGAAGCTCTCTGGGAA GCACAACAAGCAGAGTCAGAGTCATGACCCTGCAGCAGCAGCTTACCCGCCAGTTACTGTTGCTGGCTCAACAGCTGTAGCGCCTGAGCATGAGAAGAAG AGCGTGTTTGAGAAGATCAAGGACAAGTTGCCTGGACATGGCCACCACAATCACTAG
AA sequence Show only first row Show all	>Lus10041969 pacid=23153972 polypeptide=Lus10041969 locus=Lus10041969.g ID=Lus10041969.BGIv1.0 annot-version=v1.0 MAELRDEYGNRVELTDQLGKPVELRDEHGNPVHIKGVAIPAADADATIAEAPLHLVPPLVGGERREKDPLETTHHTLGDALKSTTTNDPTTETADVSIAG PAAAAGTDTVGLVSTTVIEMKESGYAPEIQRSPSSTSSSGTSEDDGEGGRRKKKGLTQKIKEKLSGKHNKQSQSHDPAAAAYPPVTVAGSTAVAPEHEKK SVFEKIKDKLPGHGHHNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10041969 [exp]	0	1
AT3G47340		AT-ASN1, DIN6, ...	DARK INDUCIBLE 6, ARABIDOPSIS ...		Lus10031870 [exp]	5.9	0.6362
AT5G37060		ATCHX24	cation/H+ exchanger 24, ARABID...		Lus10031852 [exp]	17.3	0.5798
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Lus10018493 [exp]	20.0	0.5638
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10007909 [exp]	21.6	0.5702
AT5G20690			Leucine-rich repeat protein ki...		Lus10005175 [exp]	23.1	0.5390
AT1G19880			Regulator of chromosome conden...		Lus10010614 [exp]	24.7	0.5145
AT2G29060	GRAS		GRAS family transcription fact...		Lus10037752 [exp]	28.2	0.5373
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10008682 [exp]	34.6	0.5374
AT5G18020			SAUR-like auxin-responsive pro...		Lus10027690 [exp]	36.3	0.5221
AT1G52190			Major facilitator superfamily ...		Lus10008539 [exp]	39.1	0.5361

Compare expression of checked genes

Lus10041969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.