Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17310 332 / 6e-107 AtUGP2, UGP2 UDP-glucose pyrophosphorylase 2 (.1.2) AT3G03250 328 / 1e-105 AtUGP1, UGP1, UGP UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) AT3G03600 270 / 9e-87 RPS2 ribosomal protein S2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020788 [exp] 324 / 8e-104 AT5G17310 781 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10007370 [exp] 322 / 3e-100 AT5G17310 785 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Lus10010957 [exp] 301 / 1e-95 AT3G03250 676 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Lus10031365 [exp] 297 / 4e-94 AT3G03250 662 / 0.0 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G070001 [exp] 723 / 0 AT3G03250 375 / 9e-124 UDP-GLUCOSE PYROPHOSPHORYLASE 1 (.1) Potri.017G144700 [exp] 342 / 1e-110 AT5G17310 782 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.004G074400 [exp] 330 / 4e-106 AT5G17310 759 / 0.0 UDP-glucose pyrophosphorylase 2 (.1.2) Potri.004G074750 [exp] 88 / 2e-20 AT5G17310 222 / 2e-72 UDP-glucose pyrophosphorylase 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF01704 [flax] [poplar] UDPGP UTP--glucose-1-phosphate uridylyltransferase CL0067 [flax] [poplar] SIS PF00318 [flax] [poplar] Ribosomal_S2 Ribosomal protein S2
Representative CDS sequence Show only first row Show all	>Lus10041971 pacid=23154032 polypeptide=Lus10041971 locus=Lus10041971.g ID=Lus10041971.BGIv1.0 annot-version=v1.0 ATGACAATAAATTCAGTTATTATCCAGAAGCTGCTGAGCACCAATGCTCACTTGGGCAAGCGAGCTGCAGCTCACCACTTCAAGATCTTCACCAGCGGGG TGCGCGACGGGGTCTCCATTATCGATTCTGACAAAACCCTAATATGCCTTCGCAATGCCACCAACTTCATCGCTCAGCTGGCTCGTGAGAAGAATGCCCG GTTCTTGTTTGTCAACACCAATCCGCTCTTTGATGAGATAGTGGAGCAGATGACCAAGAAAATTGGGCTGTATAGTCCCAGGGATAAGATCATTTGGAAA ATGGGCGGCTTTTTGACCAACAGCTTCAGTCCCAAGAAATTCCGTTCCAGAAATAAGAAGGTTTGTTTTGCATCGGTACAACCGCCAGATTGTGTGGTGG TGTTGGACACGGACAGGAAGAGTTCAGTGATTTTGGAGGCTGATAAACTTCAAGTTCCCATTGTAGCTCTGGTGGATTCAAATTTGCCAAGGGATTATTA CAAGAAGATTGCGTATCCTGTGCCTGCTAATGATTCAATGGAGTTTGTGTACTTGTTTTGCAATATCATTACTAAGACTTTTTTGCTTGAGCGCAAGAAG ATGAGGGAAGCAGAGGGAGATACAGTGGAAGATGATGAGCCAGCTACCTCATCAAAAGAACTTGGAAAGGAATTCCGTCGAAGTATAACTAGAACCAGCT CTGCAATCGATGAAGTCCTTGTTGTTCCTTATGAGAGCTTAGTTCCTATTCTTGAAGATTCTGAAGAAACAAAGCAAATCTTGGATAAGCTTGTGGTGGT GAAGTTAAATAGTGCGTTGGGAACTGCTATAGGTTGTAATGGCCCCAAGTCTATAATTGAAGTTTATGATGGTTTAACATCTCTTGATTTACTTGTGAAT CAAATTCAGACTCTTAATCAGAGGTATGGGTCTGATATCCCGCTGGTGCTTATAAACTCTGCCGGAACCCATGATGTCACATCGAAGGTTTTGGAGCAAT ATTCCCCTTCGAATATTGATATTCTTCCTATCCAACAGGGCCAGCTGCCTGCGGAATTCCCTGACATCCTGGAAAATGAGAATAAATTGTATGCTTCTGA TCAAGCAGCAGCACTCGGGTCTCTGATTGATAATGGGGTGCTTGATGTCTTATTACAGAAGGGAAAGGAATACGTTCTCGTAATAAGCCCAGACAACTCA GCTGTTGCAGTTGATGCAAAGATATTGAATCACTTAATCACAAACAATATTGAGATCTGCATGGAGCTTGGCGAAATTGCTGAGGATCCATCAGTGCATT CGACGGAGAAGTTCAAATTCATCAATACAAAAACATCGTGGGTGAGCTTGAAAGCTATCAAAAGGCTCGCTGATACAAATTCTCTTAAGATGGATAATGT TTCTACTTCTGAGTTATTTGATCAGGCAATTGCAATCAATGTTCCTCAATCTCGGTTTGTTCAACTAAATACCACGTCTGACTTGCTCCTTATTAAGTCT GATCTTTACGGCGTCATTGATGGTTCCCTAGCAAGGAATCCATCCAGAACTAGCCCACTAGATCCATCCGTTCAATTAGGGCCTGAATTTGAAAAGATTG ATAACTTCCAGAATCGCTTCGAGTCCATTCCTAGCATAGTTGAGCTAGACACCTTGAAAGTCACTGGGGATGTATGGTTTGGGGCTGGTGTTACTCTTAA GGGTAACGTAAGCATCAATGCGGAACCGGGCTCTACACTGAAGATTCCCAATGACTCGGTGATCGAGAATAAGGGGATTTCATTTCCTCTTCATAGTACC TGTTCCGCTAAGCTAGCTGATCTGGATGGAGTGGTAATTAGTAATAATGATGATGATTTCATCTGGAAAATCTATATGGTAAGGTTCGACGCGCTCAATG ATCCGTCGAAAATGTTGTTCTGCGCGAGGTCCTATCCATTCGAGGTGTTTTTGGGTGTGTATCTTGAAGTTCATGTATATAAGTAA
AA sequence Show only first row Show all	>Lus10041971 pacid=23154032 polypeptide=Lus10041971 locus=Lus10041971.g ID=Lus10041971.BGIv1.0 annot-version=v1.0 MTINSVIIQKLLSTNAHLGKRAAAHHFKIFTSGVRDGVSIIDSDKTLICLRNATNFIAQLAREKNARFLFVNTNPLFDEIVEQMTKKIGLYSPRDKIIWK MGGFLTNSFSPKKFRSRNKKVCFASVQPPDCVVVLDTDRKSSVILEADKLQVPIVALVDSNLPRDYYKKIAYPVPANDSMEFVYLFCNIITKTFLLERKK MREAEGDTVEDDEPATSSKELGKEFRRSITRTSSAIDEVLVVPYESLVPILEDSEETKQILDKLVVVKLNSALGTAIGCNGPKSIIEVYDGLTSLDLLVN QIQTLNQRYGSDIPLVLINSAGTHDVTSKVLEQYSPSNIDILPIQQGQLPAEFPDILENENKLYASDQAAALGSLIDNGVLDVLLQKGKEYVLVISPDNS AVAVDAKILNHLITNNIEICMELGEIAEDPSVHSTEKFKFINTKTSWVSLKAIKRLADTNSLKMDNVSTSELFDQAIAINVPQSRFVQLNTTSDLLLIKS DLYGVIDGSLARNPSRTSPLDPSVQLGPEFEKIDNFQNRFESIPSIVELDTLKVTGDVWFGAGVTLKGNVSINAEPGSTLKIPNDSVIENKGISFPLHST CSAKLADLDGVVISNNDDDFIWKIYMVRFDALNDPSKMLFCARSYPFEVFLGVYLEVHVYK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Lus10041971 [exp]	0	1
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10034788 [exp]	1.4	0.9624
AT1G78900		VHA-A	vacuolar ATP synthase subunit ...		Lus10034836 [exp]	2.0	0.9547
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	2.8	0.9583
AT5G02970			alpha/beta-Hydrolases superfam...		Lus10026484 [exp]	5.2	0.9306
AT4G13780			methionine--tRNA ligase, putat...		Lus10016658 [exp]	5.5	0.9531
AT1G09640			Translation elongation factor ...		Lus10002537 [exp]	6.0	0.9561
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Lus10034304 [exp]	6.5	0.9516
AT2G38040		CAC3	acetyl Co-enzyme a carboxylase...		Lus10021126 [exp]	7.7	0.9344
AT5G28850			Calcium-binding EF-hand family...		Lus10032772 [exp]	7.7	0.9281
AT3G20330		PYRB	PYRIMIDINE B (.1)		Lus10013346 [exp]	8.8	0.9505

Compare expression of checked genes

Lus10041971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.