Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39150 482 / 2e-172 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 456 / 6e-162 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 298 / 4e-99 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G76700 296 / 3e-98 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 295 / 8e-98 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT3G62600 60 / 8e-10 ATERDJ3B DNAJ heat shock family protein (.1) AT5G22060 59 / 1e-09 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G17830 58 / 4e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT1G10350 57 / 4e-09 DNAJ heat shock family protein (.1) AT4G28480 57 / 6e-09 DNAJ heat shock family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017980 [exp] 619 / 0 AT4G39150 532 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 553 / 0 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 550 / 0 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 308 / 7e-103 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 303 / 7e-100 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 284 / 2e-93 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 252 / 6e-81 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013981 [exp] 64 / 5e-11 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10032100 [exp] 59 / 2e-09 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119800 [exp] 468 / 1e-166 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 429 / 3e-151 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 320 / 2e-107 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 315 / 1e-105 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 289 / 8e-96 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 283 / 2e-93 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.018G034600 [exp] 62 / 1e-10 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.006G246700 [exp] 58 / 2e-09 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 58 / 3e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.007G135700 [exp] 58 / 3e-09 AT2G20560 416 / 3e-146 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10041972 pacid=23153820 polypeptide=Lus10041972 locus=Lus10041972.g ID=Lus10041972.BGIv1.0 annot-version=v1.0 ATGGTGAAAGAGACGGATTATTACGACATTTTGGATGTCAATGTCGACGCCACAGCTGCTGATATCAAGAAAGCTTACTACATCAAGGCAAGAACAGTTC ATCCTGATAAAAACCATGGTGATCCAAAGGCCGCAGAAAATTTCCAGAAACTTGGAGAGGCATATCAGGTGTTAAGTGATCCGGAGAAACGCGAAGCTTA TGACAAGCATGGGAAGGAAGGAGTGCGACAGGATGCCATGGTGGACCCCGCAGCTGTGTTTGGTATGCTATTCGGCAGCGAGTACTTTGAAGATTACATT GGTCAGCTTGCTTTGGCATCAATATCAACTATTGAAATTGAAGAGAGCAATCTCGATCCCGAAACTCACAAGCAAAGATTTCAGGAGAAGATAAAGGCAA TGCAAAAGGATAGGGAAGAAAAACTGATCACAAAGCTCAAAATCCACCTCGACCCGTTTGTGGAAGGACGGGTGGATGAGTTCGTCAAGTGGGCGAATTC CGAGGCCAAACGGCTCTCCGAAGCTGCATTTGGTGAAGCAATGCTGCATACAATCGGCTATATCTATACGCGTAAAGCTGCTAGGGAGATCGGAAAGGAT AATCGATACATGAGAGTGCCGTTTTTAGCAGAGTGGGTACGAGATAAAGGTCACCAAATGAAATCGCAAGTAATGGCTGCTTCAGGTGCTGTCTCTTTAA TTCAAATACAGGAGGAACTAAAGAAACTGAACCAAGCAGAGAAAAAAGAAGAGAACTTGATGAAAGCTGTTGAGGACAGGAAGGATGCTATGCTGCAGTC ACTTTGGCAGATCAATGTGGTCGACATCGAGACTACTTTGTCGCGCGTCTGCCAAGCTGTACTTAAAGACCCTACTGTGTCGAAAGATGTCCTGCGACTG CGAGCCAAAGGACTGAAGAAGCTTGGAACAGTCTTCCAAGGTGCGAAAGCTGCTTACTGCAGGGAAAACAGCCTGCGCCACGAGAGTAGCTTGGTTGATC CCGCTGTAAACTCTCGCCTGGTCTGA
AA sequence Show only first row Show all	>Lus10041972 pacid=23153820 polypeptide=Lus10041972 locus=Lus10041972.g ID=Lus10041972.BGIv1.0 annot-version=v1.0 MVKETDYYDILDVNVDATAADIKKAYYIKARTVHPDKNHGDPKAAENFQKLGEAYQVLSDPEKREAYDKHGKEGVRQDAMVDPAAVFGMLFGSEYFEDYI GQLALASISTIEIEESNLDPETHKQRFQEKIKAMQKDREEKLITKLKIHLDPFVEGRVDEFVKWANSEAKRLSEAAFGEAMLHTIGYIYTRKAAREIGKD NRYMRVPFLAEWVRDKGHQMKSQVMAASGAVSLIQIQEELKKLNQAEKKEENLMKAVEDRKDAMLQSLWQINVVDIETTLSRVCQAVLKDPTVSKDVLRL RAKGLKKLGTVFQGAKAAYCRENSLRHESSLVDPAVNSRLV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10041972 [exp]	0	1
AT4G25330			unknown protein		Lus10006358 [exp]	3.9	0.8302
AT4G00870	bHLH	bHLH014	basic helix-loop-helix (bHLH) ...		Lus10030212 [exp]	4.0	0.7402
AT1G77020			DNAJ heat shock N-terminal dom...		Lus10029744 [exp]	6.3	0.7509
AT1G20050		HYD1	HYDRA1, C-8,7 sterol isomerase...		Lus10032965 [exp]	7.9	0.7727
AT1G69550			disease resistance protein (TI...		Lus10000744 [exp]	10.6	0.6913
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Lus10013284 [exp]	14.1	0.7343
AT1G77580			Plant protein of unknown funct...		Lus10018164 [exp]	14.7	0.7365
AT5G13710		CPH, SMT1	CEPHALOPOD, sterol methyltrans...		Lus10029498 [exp]	15.1	0.7256
AT1G79650		AtAO1, RAD23B, ...	RADIATION SENSITIVE23B, Arabid...		Lus10026110 [exp]	15.8	0.7346
AT1G68910		WIT2	WPP domain-interacting protein...		Lus10029109 [exp]	16.7	0.7722

Compare expression of checked genes

Lus10041972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.