Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 296 / 4e-98 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 287 / 3e-94 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 268 / 2e-87 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 274 / 8e-86 unknown protein AT4G15970 255 / 3e-82 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 203 / 2e-62 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 199 / 5e-61 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 194 / 8e-59 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 161 / 2e-46 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 58 / 6e-09 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017981 [exp] 672 / 0 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 561 / 0 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 346 / 3e-117 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 342 / 1e-115 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 312 / 6e-107 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 304 / 4e-101 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 287 / 6e-95 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 281 / 2e-92 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 269 / 7e-89 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 306 / 4e-102 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 301 / 2e-100 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 291 / 6e-96 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 282 / 8e-93 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 217 / 1e-67 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 209 / 2e-64 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 202 / 2e-61 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 201 / 2e-61 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G042700 [exp] 57 / 1e-08 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 53 / 2e-07 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10041973 pacid=23153837 polypeptide=Lus10041973 locus=Lus10041973.g ID=Lus10041973.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGCCCGGCGAGAAGCTTCACGTGATCAGAAAGGATGTCGACGCCGATAATTACCGCGGTGCTAGTTCATTCCTCCGGTTGGAAATCTGCG CCGGCGTGGTTCTCGGTGTCGTTTTGTGCTGCACCATCCTCTACGCGTCTTCCTACGCTTCTTCGCCGGAGTTACTGCTCTCGTTTTCTCCGGTCCGTCA GAAATTACAGTCTCCGAACAACAACACTACCACCACCGACATCGACCCAGAGCTAATCGCAGTACTACGTAGAGCAACAACAACACCACCAGAAGGATCA CTAATACCAAATAAGACGGTGATCCTAGTGACGATAACCGAAGCCTTAGCGAGACCGGGTTCGATGCTGGACTTGTTCCTCGAGAGCTTTTGGGTTGGAA ACGGGACCCAGGAACTACTCAGGCATTTAGTGATCGTGTCCCTGGACCACAAGGCTCATCAACGATGCCAAACCGTGCACCCACATTGTTACGAGATGTC GTCGCCGAGTACCAAACAACTCAGCAATTTAACTACGGATGCGTCGTTCATGACCCAGGAGTACTTGGTTGTCGTGTGGAGGAAGATTGAGCTGGTGGCT TCTGTTTTACAACTCGGTTATGACTTGCTACTCACGGATGCTGACATAATGTGGTTCAGAAACCCATTCCCGCACTTGGCGGCCGAACCGGCTGCCGACA TCCAAGTGGCGTGCGACGCTTACCGCGGCAACTCCTCCGATCCCAACACTGGATTCCTCTTTGTGAGAGCGAACAACATGACGATTCAGTTTTTAGACCA TTGGTACAAGTCGAGGATCAAATATCCTGGAAAGCACGACCAGGACGTGTTCAGCCAGATCATCCGGTCGGACCAGTTGGTCCACAAAATTGGACTGCGC ATGCGGTTCCTTGACACGGCTTACTTTGGTGGGTTCTGCGAGCCAATCAAGGACCTCAGCATGGCCACCACCATGCATGCCAATTGCTGCGTGGGGATGG GAACCAAGGTCCATGACCTTAGGAATGTGCTTGGGGATTGGAAGCACTTCTCGTCGGCTGATCAATCGGGGCAGAACTCGACTCGGTTCGATTGGAGACC GCCACGTGTCCGGTGCGGCCGCTGGTAG
AA sequence Show only first row Show all	>Lus10041973 pacid=23153837 polypeptide=Lus10041973 locus=Lus10041973.g ID=Lus10041973.BGIv1.0 annot-version=v1.0 MASTPGEKLHVIRKDVDADNYRGASSFLRLEICAGVVLGVVLCCTILYASSYASSPELLLSFSPVRQKLQSPNNNTTTTDIDPELIAVLRRATTTPPEGS LIPNKTVILVTITEALARPGSMLDLFLESFWVGNGTQELLRHLVIVSLDHKAHQRCQTVHPHCYEMSSPSTKQLSNLTTDASFMTQEYLVVVWRKIELVA SVLQLGYDLLLTDADIMWFRNPFPHLAAEPAADIQVACDAYRGNSSDPNTGFLFVRANNMTIQFLDHWYKSRIKYPGKHDQDVFSQIIRSDQLVHKIGLR MRFLDTAYFGGFCEPIKDLSMATTMHANCCVGMGTKVHDLRNVLGDWKHFSSADQSGQNSTRFDWRPPRVRCGRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041973 [exp]	0	1
AT5G37490			ARM repeat superfamily protein...		Lus10001079 [exp]	1.0	0.9981
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021314 [exp]	2.0	0.9978
					Lus10041163 [exp]	2.4	0.9962
AT1G03220			Eukaryotic aspartyl protease f...		Lus10010278 [exp]	3.9	0.9958
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10022762 [exp]	4.9	0.9960
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	4.9	0.9953
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	4.9	0.9957
AT1G10370		GST30B, ATGSTU1...	GLUTATHIONE S-TRANSFERASE U17,...		Lus10030806 [exp]	5.2	0.9952
AT4G37290			unknown protein		Lus10019310 [exp]	5.9	0.9956
AT3G26770			NAD(P)-binding Rossmann-fold s...		Lus10021313 [exp]	7.5	0.9925

Compare expression of checked genes

Lus10041973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.