Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 180 / 2e-55 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 176 / 6e-54 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 181 / 2e-53 unknown protein AT4G15970 155 / 5e-46 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 138 / 1e-39 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28695 133 / 9e-38 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 131 / 2e-37 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT5G40900 101 / 7e-26 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G70630 52 / 5e-08 Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041973 [exp] 313 / 2e-107 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 308 / 1e-105 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 308 / 2e-105 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 209 / 2e-66 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 206 / 1e-65 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 189 / 4e-59 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 181 / 2e-56 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 179 / 2e-55 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 173 / 4e-54 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G099400 [exp] 202 / 9e-64 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 192 / 1e-60 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 186 / 4e-58 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G037300 [exp] 185 / 8e-58 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 157 / 6e-47 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 150 / 5e-44 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 146 / 1e-42 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 139 / 4e-40 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.008G186800 [exp] 46 / 8e-06 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 45 / 1e-05 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10041975 pacid=23153577 polypeptide=Lus10041975 locus=Lus10041975.g ID=Lus10041975.BGIv1.0 annot-version=v1.0 ATGACCCAAGAGTATTTGGTGGTCGTGTGGAGGAAGATTGAGTTGGTTGCATCTGTGTTGCAGCTTGGTTATGACTTGATCCTCACGGATGCTGACATAA TGTGGTTCAGAAACCCATTCCTACACTTGGCTGCCGAACCGGCAGCCGACATCCAAGTAGCGTGCGATCGTTTCAACGGGAACTCCTCGGATCCCAACAC CGGGTTCTTCTTTGCCAGATCAAACAACATGACTATCCGATTTTTGAACCATTGGTACGAGTCCAAGGACAGGTATCCAGGAGAGCACGACCAGGACGTA TTCACCAAAGTCATTCGGTTCGACCGGTTGGTTTCCGACCCAATCGGGATACGTATTTGGTTCCTTGACACGGCTTATTTCGGCGGGTTATGTGAACCAG TGAAGGACCTCGATTTGGCCATAACAATGCACGCCAACTGCTGCGTGGGGATGGGAGCTAAGGTGCACGATCTCAGGAATGTGCTTTTGGATTGGAAACA GTACTTATTGTCTGCTGATCCGTCGAGGATCTCGACTCGCTTCGATTGGAAACCGCCACGTTTCGAGTGCAGGGTGCCTGGTGAGTAA
AA sequence Show only first row Show all	>Lus10041975 pacid=23153577 polypeptide=Lus10041975 locus=Lus10041975.g ID=Lus10041975.BGIv1.0 annot-version=v1.0 MTQEYLVVVWRKIELVASVLQLGYDLILTDADIMWFRNPFLHLAAEPAADIQVACDRFNGNSSDPNTGFFFARSNNMTIRFLNHWYESKDRYPGEHDQDV FTKVIRFDRLVSDPIGIRIWFLDTAYFGGLCEPVKDLDLAITMHANCCVGMGAKVHDLRNVLLDWKQYLLSADPSRISTRFDWKPPRFECRVPGE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041975 [exp]	0	1
					Lus10021703 [exp]	1.7	0.9400
AT1G68150	WRKY	ATWRKY9, WRKY9	WRKY DNA-binding protein 9 (.1...		Lus10016682 [exp]	4.1	0.9476
AT2G03830		RGF8	root meristem growth factor 8,...		Lus10036830 [exp]	5.5	0.9343
AT5G24070			Peroxidase superfamily protein...		Lus10025586 [exp]	6.0	0.9407
AT5G60700			glycosyltransferase family pro...		Lus10041317 [exp]	6.9	0.9343
					Lus10036165 [exp]	7.3	0.9110
AT1G77260			S-adenosyl-L-methionine-depend...		Lus10000973 [exp]	8.1	0.9074
AT5G24070			Peroxidase superfamily protein...		Lus10022962 [exp]	8.4	0.9270
AT1G70560		CKRC1, WEI8, TA...	WEAK ETHYLENE INSENSITIVE 8, S...		Lus10006199 [exp]	16.2	0.9200
AT1G43710		EMB1075	embryo defective 1075, Pyridox...		Lus10028592 [exp]	17.4	0.9212

Compare expression of checked genes

Lus10041975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.