Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 291 / 1e-95 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 281 / 1e-91 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 260 / 9e-84 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 267 / 8e-83 unknown protein AT4G15970 248 / 3e-79 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 202 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 202 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 198 / 2e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 164 / 2e-47 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 61 / 5e-10 XEG113 xyloglucanase 113 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017981 [exp] 563 / 0 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 561 / 0 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 417 / 4e-145 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 337 / 3e-113 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 334 / 3e-112 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 308 / 6e-105 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 286 / 3e-94 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 283 / 1e-92 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 267 / 7e-88 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 294 / 2e-97 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 288 / 7e-95 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 281 / 1e-91 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 273 / 4e-89 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 219 / 3e-68 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 207 / 2e-63 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 201 / 2e-60 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 198 / 2e-60 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G042700 [exp] 56 / 2e-08 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G134400 [exp] 55 / 5e-08 AT1G19360 622 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10041976 pacid=23153950 polypeptide=Lus10041976 locus=Lus10041976.g ID=Lus10041976.BGIv1.0 annot-version=v1.0 ATGGCCGGAAGTTCGATCGACGGGGAGCTTCCCGGCGGAAGCAACGGCAAAAATTCCCACTACGGAGAATGCGGTCATTTCCTCCGGGGGTTCAGCCTGG AAATCTTGGCAGTAGCCTTCTTTGTCGTTGGAGTGCTCTACTTTCTTTCCCTCAACTACTACACCTCCTCAGTCCCCTATGGTTCCTTCCGCCGTCTCTT CCATAAGGTCACCTCGCCGGAAACTATTCCTCCGATTCCGGCACCTCCTTCACTTTCGACGGAAGCTAGTCATCCGGCCCCGGGAAACGATGACAACATC AACCCAGAGTTACTGGCAGTACTACGTAGAGCAACAACCACGCCACAAGAAGCAGCATCGCTAATACCGAATAAGACAGTGATCCTAGTGACGATAACCG AAGCCTTAGCAAGACCGGGTTCGATGTTGGACTTGTTCCTCGAGAGTTTCTGGGTTGGAAACAGAACCCAGGAACTACTCAGGCATTTAGTGATCGTATC CCTGGACCACAAGGCTCATCAACAATGCCAAGCCGTGCACCCACATTGTTACGAGATGTCATTGCCGAGTACCAAACAACTCAGTAATTTAACTACGGAT GCCTTGTTCATGACCCAAGAGTACTTGGTTGTCGTGTGGAGGAAGATTGAGTTGGTGGCCTCTGTTTTACAACTCGGTTATGACTTGCTCCTCACAGATG CTGATATAATGTGGTTCAGAAATCCATTCCCGCACTTGGCTGCCGAACCGGCTGCCGACATCCAAGTGGCGTGCGACACTTATCGCGGCAGCTCATCCGA TCCCAACACTGGATTCCTCTTCGTGAGAACGAACAACATGACGATTCAGTTCCTAAAACATTGGTATGAGTCCAGGGTCAAGTATCCTGAAAAGCACGAT CAAGACGTGTTCAATCATATCATCCGATCCGACCAAATGGTCCACCAAATCGGACTACGTATGCGGTTCCTTGACACGGCTTACTTCGGTGGGTTTTGCG AGCCGGTCAAAGACCTCAGTGTGGCCACCACCATGCACGCCAATTGCTGCGTGGGGATGGGAGCCAAGGTCCATGACCTTAGGAATGTGCTTAATGATTG GAAACACTTCTCATCGGGTGACTCGGGGCAGAACTCGACTCGGTTCAATTGGAGGCCGCCACGTGTCCAATGCCATCGCTGGTAG
AA sequence Show only first row Show all	>Lus10041976 pacid=23153950 polypeptide=Lus10041976 locus=Lus10041976.g ID=Lus10041976.BGIv1.0 annot-version=v1.0 MAGSSIDGELPGGSNGKNSHYGECGHFLRGFSLEILAVAFFVVGVLYFLSLNYYTSSVPYGSFRRLFHKVTSPETIPPIPAPPSLSTEASHPAPGNDDNI NPELLAVLRRATTTPQEAASLIPNKTVILVTITEALARPGSMLDLFLESFWVGNRTQELLRHLVIVSLDHKAHQQCQAVHPHCYEMSLPSTKQLSNLTTD ALFMTQEYLVVVWRKIELVASVLQLGYDLLLTDADIMWFRNPFPHLAAEPAADIQVACDTYRGSSSDPNTGFLFVRTNNMTIQFLKHWYESRVKYPEKHD QDVFNHIIRSDQMVHQIGLRMRFLDTAYFGGFCEPVKDLSVATTMHANCCVGMGAKVHDLRNVLNDWKHFSSGDSGQNSTRFNWRPPRVQCHRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10041976 [exp]	0	1
AT3G13690			Protein kinase protein with ad...		Lus10009559 [exp]	3.3	0.9853
					Lus10027076 [exp]	4.0	0.9526
AT2G34440	MADS	AGL29	AGAMOUS-like 29 (.1)		Lus10011787 [exp]	4.7	0.9717
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	5.1	0.9790
					Lus10015336 [exp]	5.2	0.8949
					Lus10003825 [exp]	6.2	0.9790
					Lus10029261 [exp]	7.2	0.9790
AT1G14200			RING/U-box superfamily protein...		Lus10005237 [exp]	8.0	0.8675
AT5G56990			unknown protein		Lus10029528 [exp]	8.1	0.9790
					Lus10006287 [exp]	8.1	0.8626

Compare expression of checked genes

Lus10041976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.