Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48410 1554 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 1387 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 1046 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 561 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 506 / 9e-163 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 503 / 6e-161 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 463 / 1e-146 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31280 456 / 2e-142 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21030 439 / 8e-138 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31290 421 / 9e-128 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017983 [exp] 1853 / 0 AT1G48410 1602 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 1709 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1571 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 1407 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 1406 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10014386 [exp] 727 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 620 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 618 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 616 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037100 [exp] 1648 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 1618 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 1411 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 1409 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.001G213700 [exp] 1090 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 1076 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1053 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 619 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 518 / 8e-167 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.016G024200 [exp] 508 / 7e-163 AT2G27040 1246 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10041978 pacid=23154008 polypeptide=Lus10041978 locus=Lus10041978.g ID=Lus10041978.BGIv1.0 annot-version=v1.0 ATGTTGTTAGGGACTGGGGTTGCTGCTCTCTCTTACTCGCTGTGTGTTTATATCCAGTGCCCAGTGTTTAGGTTTGTCAATGTTGTTAGGGACTGGGTTG CTACGTTTATATCCAGTGCCGTGGGCACTTGTTCCGTTCATATGATTTTCCTTGAAAGCCAATTGTATTTTTTCTCTACAGGCATTGTTAAAATGGTTAG GAAGAGGAGAACCGAAAATCCACCGAGTGGTGGTGAGAGCTCTGAGCCTCAAGATCCTTCATTTGGCTCTGGCCAAGGTGGCCGCGGTGGTGGAGCCCCC CAAGGTGGCCGCGGTGGAGGCCAGCAGCCTCAGCAAGTTGGAGCCCCCCAAGTTGGTCGTGGTGGAGGCCAGCAGCCTCAGCAAGTTGGAGCCCCCCAAG GTGGTCGTGGTGGAGGCCAGCAGCCTCAGCAAGGTGGAGTTCCCCAAGGCGGCCGCGGTGGAGGCCAGCAGCCTCAGCAAGGTGGAGGTCCCCAAGGCGG CCGTGGTGGAGGCCAGCAGCCTCAGCAAGGTGGACGTGGAGGTGGCTATGGGGGGAGAGGTCGTGGTGCTCCCCAGAACCCTCCTTATGGAGGAAGAGGA GGGCCACCGCAGCAGGGTGGTCGAGGATACGGATATGGTAGTGGCCGTGAAGGAGGAGGTCCTCCTTATGTTCCACCAAGTGGACCATCCAGATCTCCAG TTCCCGATCTGCCCCAAGCAACGCCGTCTCCTTTTGAAGTTGGTGCAAGTCCTCAGCCGAAACATTCTGAGGCAAGTTCGTCACGGACACCTGAGCCTTC ACATGCTACTGGAGTTTCACAGCAGATGCAGCAACTAACAATTCAACAGGAAGGCCCATCTAGTCAAGCTATTCAGACTGCTGTGCCACCTGCATCGAGC AAGTCTGTTAGGTTTCCCCTTCGTCCTGGAAAGGGTACCGTGGGCCATAAGTGTGTGGTGAAAGCTAACCACTTCTTTGCGGAGCTTCCTGACAAAGATC TGCACCAATATGATGTTACCATCACTCCCGAGGTCGCTTCAAGAGGAGTTAATCGTGCTGTGATAAATCAGCTGGTTACTTTGTACCGAGAATCCCATCT TGCAAAGCGTCTTCCTGCTTATGATGGGCGGAAGAGTCTCTACACTGCTGGGCCCTTGCCTTTCCAATCAAAGGAGTTTCGCATCACCCTAGTTGATGAA GATGATGGAACAGGCGGTCAAAGGAGGGTAAGAGAATTCAAAGTCGTGATAAAGTTGGCTGCACGTGCAGACTTGCACCATTTGGGACTCTTTTTGCAGG GTAGGCAAGCTGACGCCCCGCAGGAAGCACTCCAAGTTCTTGACATCGTTCTGCGAGAGTTGCCTAATTCGAGGTATTGTCCAGTTGGTCGATCGTTTTA TTCCCCTAATCTAGGGAGGAGACAGCCACTTGGTGATGGTCTGGAGAGCTGGCGTGGTTTCTATCAGAGCATTCGGCCTACTCAAATGGGGCTGTCTCTG AATATCGATATGTCTTCGACTGCATTTATTGAGCCTCTGCATGTCATTGATTTTGTGTGTCAATTACTAAACCGTGATGCCTCTTCTAGGCCACTATCAG ATGCTGACCGTGTGAAGATAAAAAGGGCTTTGAGAGGAGTGAAAGTTGAAGTTACCCACCGTGGAAATATGCGACGGAAGTACCGTATATCTGGCTTAAC ATCACAGGCTACCCGAGATTTGACTTTCCCTGTGGATGAGAGAGGAACCATGAAATCTGTTGTGGAGTACTTCTTTGAGACTTATGGTTTCTCAATCCAG CATACTCAGTGGCCCTGCCTCCAAGTGGGTAATCAACAAAGGCCTAATTACTTGCCTATGGAGGTGTGCAAGATTGTGGAAGGTCAGAGGTACTCTAAGA GATTGAATGAAAAGCAGATAACTAATTTGTTAAAGGTCACCTGCCAACGCCCTGTGGATAGAGAGCGTGATATTGTGGAGACTGTCAAGCATAATGCCTA TCACGAGGATCCGTACGCCACGGAGTTTGGTATCAAGATCAGTAAGAACCTTGCTTCCGTTGAAGCTCGTATACTGCCAGCTCCACGGCTGAAGTATCAT GACACTGGGAGGGAGAAGGATTGTTTACCCCATGTTGGACAGTGGAACATGATGAACAAGAAAATGGTGAATGGGGGAACTGTGAACAATTGGATATGCA TTAACTTCTCTCGACAAGTTCAAGACAGTATGGCTCGTGGGTTTTGTTTCGAACTTGCACAGATGTGTCAAATTTCTGGCATGCAATATAATCCTGATCC AGTGATTCCACCAGTCAGTGGTAGACCAGAGCACGTTGAAAAGGTGTTGAAAACTCACTACAGTAATGCGATGATGAAGCTCCCGAAAGGAAGAGAGCTT GATTTGCTCATCGTTATTCTTCCTGATAAAAATGGATCTCTTTATGGGGACCTGAAGCGGATCTGCGAAACAGATCTCGGGCTTGTTAGTCAGTGCTGCT TGACAAAACATGTTTTCAAAATGAGCAAGCAGTACCTGGCTAATGTGGCCTTGAAAATCAACGTGAAGGTTGGCGGAAGAAACACTGTGTTAGTTGATGC ACTGTCAAGACGAATTCCTCTGGTTAGTGATCGGCCAACGATCATCTTTGGTGCCGATGTCACTCACCCTCATCCCGGAGAGGACTCGAGTCCCTCTATT GCTGCTGTTGTGGCTTCTCAAGACTGGCCGGAGATAACGAAATATGCAGGGCTCGTCTGTGCTCAAGCTCATCGCCAGGAACTGATTCAGGACTTGTACA ATTCGTGGAACGATCCTGTCAGGGGGGCAGTTTCTGGTGGCATGGTCAAGGAGCTGCTCATTTCTTTCCGCCGAGCTACTGGCCACAAGCCGGAGCGTAT TATATTCTACAGAGATGGAGTGAGCGAGGGACAATTCTACCAGGTGCTACTGTATGAGCTAGATGCCATTCGCAAGGCCTGTGCTTCCTTGGAGCCGAAC TACCAGCCACCAGTGACTTTCGTCGTTGTCCAGAAGCGTCACCACACAAGGCTTTTTGCTGACAACCATAACAATCGCAATTCTGTTGACAGGAGTGGAA ATATACTGCCTGGTACCGTTGTGGACTCCAAAATCTGCCATCCCACTGAATTCGACTTCTACCTTTGCAGCCATGCCGGAATCCAGGCAAGAAATTTGCT AATAAGTGGAACTAGCCGTCCGGCACACTATCATGTTCTGTGGGACGAGAACAAGTTCTCTGCTGATGCTCTACAGTCGCTCACAAATAACCTCTGCTAC ACATATGCCAGGTGCACTCGCTCGGTTTCTATCGTTCCTCCTGCCTATTATGCACATCTCGCAGCCTTCCGAGCCCGTTTCTACATGGAGCCTGACTCGT CAGACAGCGGTTCGATGTCCAGCGGCACTGTGGGTGGCGGTCAGGGAGGAAGAGGGACTCGAGCCCCTGGAGCCAACGCTGTCCGCCCCTTGCCATCTCT GAAGGAGAATGTGAAGAGAGTTATGTTCTACTGCTAA
AA sequence Show only first row Show all	>Lus10041978 pacid=23154008 polypeptide=Lus10041978 locus=Lus10041978.g ID=Lus10041978.BGIv1.0 annot-version=v1.0 MLLGTGVAALSYSLCVYIQCPVFRFVNVVRDWVATFISSAVGTCSVHMIFLESQLYFFSTGIVKMVRKRRTENPPSGGESSEPQDPSFGSGQGGRGGGAP QGGRGGGQQPQQVGAPQVGRGGGQQPQQVGAPQGGRGGGQQPQQGGVPQGGRGGGQQPQQGGGPQGGRGGGQQPQQGGRGGGYGGRGRGAPQNPPYGGRG GPPQQGGRGYGYGSGREGGGPPYVPPSGPSRSPVPDLPQATPSPFEVGASPQPKHSEASSSRTPEPSHATGVSQQMQQLTIQQEGPSSQAIQTAVPPASS KSVRFPLRPGKGTVGHKCVVKANHFFAELPDKDLHQYDVTITPEVASRGVNRAVINQLVTLYRESHLAKRLPAYDGRKSLYTAGPLPFQSKEFRITLVDE DDGTGGQRRVREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPNSRYCPVGRSFYSPNLGRRQPLGDGLESWRGFYQSIRPTQMGLSL NIDMSSTAFIEPLHVIDFVCQLLNRDASSRPLSDADRVKIKRALRGVKVEVTHRGNMRRKYRISGLTSQATRDLTFPVDERGTMKSVVEYFFETYGFSIQ HTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKRLNEKQITNLLKVTCQRPVDRERDIVETVKHNAYHEDPYATEFGIKISKNLASVEARILPAPRLKYH DTGREKDCLPHVGQWNMMNKKMVNGGTVNNWICINFSRQVQDSMARGFCFELAQMCQISGMQYNPDPVIPPVSGRPEHVEKVLKTHYSNAMMKLPKGREL DLLIVILPDKNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSI AAVVASQDWPEITKYAGLVCAQAHRQELIQDLYNSWNDPVRGAVSGGMVKELLISFRRATGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPN YQPPVTFVVVQKRHHTRLFADNHNNRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQARNLLISGTSRPAHYHVLWDENKFSADALQSLTNNLCY TYARCTRSVSIVPPAYYAHLAAFRARFYMEPDSSDSGSMSSGTVGGGQGGRGTRAPGANAVRPLPSLKENVKRVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10041978 [exp]	0	1
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10013286 [exp]	1.7	0.8203
AT5G46910			Transcription factor jumonji (...		Lus10035385 [exp]	2.0	0.8064
AT5G46910			Transcription factor jumonji (...		Lus10030988 [exp]	3.5	0.7578
AT1G61140		EDA16	embryo sac development arrest ...		Lus10018465 [exp]	3.5	0.7583
AT1G30755			Protein of unknown function (D...		Lus10013553 [exp]	6.9	0.7360
AT5G61390			Polynucleotidyl transferase, r...		Lus10015719 [exp]	10.6	0.7139
AT5G35560			DENN (AEX-3) domain-containing...		Lus10017173 [exp]	14.9	0.7528
AT1G61140		EDA16	embryo sac development arrest ...		Lus10011211 [exp]	15.2	0.7537
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	15.7	0.7396
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10030809 [exp]	20.8	0.7181

Compare expression of checked genes

Lus10041978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.