Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1165 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 1063 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 881 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 879 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT3G43190 825 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G20830 824 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT4G10120 147 / 5e-36 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT1G04920 147 / 1e-35 ATSPS3F sucrose phosphate synthase 3F (.1) AT5G11110 139 / 2e-33 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 124 / 9e-29 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017984 [exp] 1673 / 0 AT1G73370 1117 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 1139 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 1133 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 880 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 853 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 823 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 788 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 521 / 1e-172 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 305 / 3e-95 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029100 [exp] 1258 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 1246 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 1166 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 1146 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.002G202300 [exp] 894 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 842 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 826 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G064300 [exp] 143 / 1e-34 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 142 / 2e-34 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.001G317600 [exp] 139 / 2e-33 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10041979 pacid=23153942 polypeptide=Lus10041979 locus=Lus10041979.g ID=Lus10041979.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTTCACACCAACCATCTCTCAAACGATCCGACACCATAGCCGAATCCATGCCGGACGCACTGAAGCAGAGCCGGTACCACATGAAGAGGT GCTTCTCCAAGTTCATGTCGGATGGTAAAAGGATTATGAAGCACCAGAGCATTATGGACGAGCTTGCTGTGACCATCCAGGACAGAGGCGAAAGGGAGAA AGTGCTCGAGGGGCTGCTCGGTTACATCCTGAGCCGGACTCAGGAGGCCGCTGTGGTCCCACCGTTCGTTGCGTTCGCAGTCAGGCCGAATCCTGGGGTG TGGGAGTACGTGAAGGTGAGCGGCGATGATCTGACGGTTGATGGGATTTCAGGGTCTGAGTACTTGAAGTTCAAGGAAATGATCTTCGACCCAACCTGGG CCAGGGATGAGAGTGCACTGGAAGTGGAATTTGGAGCATTTGACCATTCTTCCCCACACCTAACACTCTCATCCTCCATTGGAAATGGAGCCAAGTACAT CTCCAAGTTCTTGTCAACCAAGCTTGATGGGAGCTCCTACAGTTCAAAACAGTTGGTAGACTATCTCATAAGCCTCAATCACCATGGAGATAGCCTGATG ATCAATGAAATACTGGATACACCAGCAAAGCTCCAAGCTGCACTCATACCAGCTGAATGCTATCTCTCAACTCTTCCATCAGACACTCCCTGCCAGGATC TTCACCAAAGGCTGAAAGGCTGGGGGTTTGAGAATGGATGGGGAGACAATGCAGGAAGAGTTAAGGAGACAATGAGGATGCTGTCAGAGTCACTTCAAGC TCCCGATGCTGAGAAACTGGACCAGCTTTTCGGCAGGATTCCCAACATGTTCAACGTTGTCATCTTCTCCCCACATGGATTCTTTGGACAGACTGATGTT CTTGGATTGCCAGACACTGGTGGCCAGGTGGTTTACATTCTTGATCAAGTGAGAGGACTGGAAGAGGAGTTGCTTCACAGGATCAAGCAGCAAGGGCTTA GAGTGAAGCCAAAGATCATTGTGATAACAAGGCTAATACCAGAAGCTAGAGGCACCAAGTGTGACCAAGAAGTGGAGCCTATTGAGAACACAACACATTC CTACATTCTCAGGATCCCATTCAAGACAACCAAAGGGACCATCCTTCCTCACTGGATCTCCCGGTTCGATGTCTACCCTTACCTCGAGAGATTTGCTCAG GCAAGTTCACTTCGGTCGGTCGAGTTTTTTCTGTCTTCGTCTGACCAGCACTCTATTCCAATTAAACAGGATTCTGCTAAGGCCATTCTCGAGCACACAG AATGCAAACCAGACCTGATAATGGGGAACTACAGCGATGGAAACTTGGTAGCCACTTTGGTAGCTGACAAGCTTGGAGTAACCCTGGGAACCATTGCCCA TGCACTGGAGAAAACCAAGTACGAAGACTCGGATGCGAAATGGAAAGATCTCGACCCGAAGTACCACTTCTCCTGCCAGTTCACCGCCGACATGGTTGCT ATGAACTCTGCCGACTTCATCGTCACCAGCACTTACCAAGAGATTGCTGGAAGCAAGGCGAAGTCTGGACAGTACGAGAGCCACACTACATTCACGATGC CGGGTCTGTGTCGATTCGTGAAAGGGATCAGTGTCTTCGATCCGAAGTTCAACATTGCTTCACCCGGAGCTGATCAGTCAGTCTACTTCCCCAACATTGA TAAGTCCAGAAGGTTGACTAAGTTCCACCCTGTGATTGAAGGGCTACTCTACAGCAAGGAAGAGAACAATGACCACATAGGCTACCTAGCTGACCCGAAG AAGCCGATAATATTCTCGATGGCAAGAATGGACACGGTGAAGAACATGACAGGGCTAACAGAATGGTACGGCAAGAACAAAACCTTAAGGGAGCTGGTCA ACCTAGTCATCGTGGGAGGGTTCTTCGATCCGAAAAAGTCAACGGACAGAGAAGAGATAGCAGAGATACAAAAGATGCATTCTTTAATCCAAAGGTACGG TCTCAAGGGACATATGAGGTGGATCGCTGCTCAAACCGATCGGTATCGAAACGGTGAGCTCTATCGGTGCATTGCAGACACCATGGGAGCCTTTGTCCAG CCGGCATTCTACGAGGCATTCGGGCTCACGGTCATCGAAGCCATGAACTGCGGGCTGCCGACTTTCGCAACTGTCCACGGTGGACCAGCTGAGATCATAG TGGATGGAGTTTCGGGGTTCCATATCGACCCTTACAATGGCGACGAATCGGGTGGGAAGATCGCTCGGTTTTTCGAGAAATGTAAGGCTGAACCGGGTTA TTGGAGCGAGATTTCGACCGGTGGGGTTAAGAGGATAAATGAGTGCTACACATGGAACATCTATGCTAAGAAATTGGTGAACATGGGTTCGATTTACGGG TTCTGGAGACGATTTAACAAGGAGCAGAAGCTTGCTAAAGGGAGATACATTCAGACATTTTACAACCTCCATTTCAGGAATTTGGTGAAGCAAAGTTTTG CTCTGAGTGAAGAACAACAGTTCAAAGTGGTGCAGGAAGCCACTGGTGGGAAACCGAAAGGGCCACTGGGTCCAACCAAATTGGCATCCCTATTGCTTCA ACCGATTACTACAACTGACCAATCAAACCAGAAAGGTGCAATCAAGCCAACGGATGATGCCACAACTGATCAAGCTCAACCAATTGCAAGGAAAGGAGAT TCCGTGCATGGCAAGGCAGAAGTGGCTTCTACTAAGAGGGAAGGTGGGGATCAGATGAGAGAATCTTGGAGGAGTCAGCAGTTTATGAGGATGTTACCTT TGCTTTTGGTAGCTTACTTGTTAGCCCGGATGTACTATCTGTATAAGTACTAA
AA sequence Show only first row Show all	>Lus10041979 pacid=23153942 polypeptide=Lus10041979 locus=Lus10041979.g ID=Lus10041979.BGIv1.0 annot-version=v1.0 MAASSHQPSLKRSDTIAESMPDALKQSRYHMKRCFSKFMSDGKRIMKHQSIMDELAVTIQDRGEREKVLEGLLGYILSRTQEAAVVPPFVAFAVRPNPGV WEYVKVSGDDLTVDGISGSEYLKFKEMIFDPTWARDESALEVEFGAFDHSSPHLTLSSSIGNGAKYISKFLSTKLDGSSYSSKQLVDYLISLNHHGDSLM INEILDTPAKLQAALIPAECYLSTLPSDTPCQDLHQRLKGWGFENGWGDNAGRVKETMRMLSESLQAPDAEKLDQLFGRIPNMFNVVIFSPHGFFGQTDV LGLPDTGGQVVYILDQVRGLEEELLHRIKQQGLRVKPKIIVITRLIPEARGTKCDQEVEPIENTTHSYILRIPFKTTKGTILPHWISRFDVYPYLERFAQ ASSLRSVEFFLSSSDQHSIPIKQDSAKAILEHTECKPDLIMGNYSDGNLVATLVADKLGVTLGTIAHALEKTKYEDSDAKWKDLDPKYHFSCQFTADMVA MNSADFIVTSTYQEIAGSKAKSGQYESHTTFTMPGLCRFVKGISVFDPKFNIASPGADQSVYFPNIDKSRRLTKFHPVIEGLLYSKEENNDHIGYLADPK KPIIFSMARMDTVKNMTGLTEWYGKNKTLRELVNLVIVGGFFDPKKSTDREEIAEIQKMHSLIQRYGLKGHMRWIAAQTDRYRNGELYRCIADTMGAFVQ PAFYEAFGLTVIEAMNCGLPTFATVHGGPAEIIVDGVSGFHIDPYNGDESGGKIARFFEKCKAEPGYWSEISTGGVKRINECYTWNIYAKKLVNMGSIYG FWRRFNKEQKLAKGRYIQTFYNLHFRNLVKQSFALSEEQQFKVVQEATGGKPKGPLGPTKLASLLLQPITTTDQSNQKGAIKPTDDATTDQAQPIARKGD SVHGKAEVASTKREGGDQMRESWRSQQFMRMLPLLLVAYLLARMYYLYKY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10041979 [exp]	0	1
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10042456 [exp]	1.0	0.9593
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10022304 [exp]	2.0	0.9499
AT5G36930			Disease resistance protein (TI...		Lus10007790 [exp]	3.5	0.9562
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Lus10025857 [exp]	3.5	0.9548
AT1G05610		APS2	ADP-glucose pyrophosphorylase ...		Lus10026213 [exp]	4.9	0.9353
AT5G36930			Disease resistance protein (TI...		Lus10033953 [exp]	5.9	0.9427
AT5G36930			Disease resistance protein (TI...		Lus10007808 [exp]	6.3	0.9421
AT1G27180			disease resistance protein (TI...		Lus10004727 [exp]	6.7	0.9331
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10007377 [exp]	7.9	0.8811
AT5G36930			Disease resistance protein (TI...		Lus10027184 [exp]	8.4	0.9373

Compare expression of checked genes

Lus10041979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.