Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27750 421 / 4e-149 ISI1 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017985 [exp] 541 / 0 AT4G27750 446 / 5e-159 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029300 [exp] 449 / 3e-160 AT4G27750 389 / 9e-137 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08045 [flax] [poplar] CDC14 Cell division control protein 14, SIN component
Representative CDS sequence Show only first row Show all	>Lus10041980 pacid=23153908 polypeptide=Lus10041980 locus=Lus10041980.g ID=Lus10041980.BGIv1.0 annot-version=v1.0 ATGCTGCTGAAGAAGCCGCTATGGAGCGTGGGATTGGAGGAGGCGGCAAAAGAAAGCTCCGACTCGTCGGAACAACAACAAAAACAACAAGCATCCTCGT CGTCGGAGGTGGTGGAGGAGCTGGTTAACTCGTTAACGCGGCAGAGGCTATACCGAGAGGTGACTCTCGCCCTCAGGTCAAGCCTCCGCGACGCTCGAGC TGAGTTCTCGTTTCTCCGCCTCCGTGGACTGCGCTCCATCCTCAACTTCCTTAGATCCGTCTCCCTCTCCGATTCAACCATCACTCTATTCTCGCAGACT CAATCCATCCCTGACCTTCAAGTGGTTCCGGTGCTGTTCCAGCACTCGCTGAAAGAATCGGACGATGTCAACGTCGTGGAGAGCTTGGATCATATACTAG GCGTCGAGCCGGTGCGAATCACGAGTCCTTCGACGAACGCAGAAGTGGCTCTTGCTCTGCGAGTTCTGGAAGGATGCTGTTTGCTTCACAGAGAGAGCAC GTTGTTGGCGCATCAGCACAAGGCGATTCAGGTATTGATGCATATACTGTCAACTAGGGGTGTGCTTGAGCAAGGTGCCTGTTTGGATGCTCTGGTTGCT ATCATGTTGGATTCTTCAGCTAATCAAGTGGATTTTGAGGCGTGCAATGGCATTGAGGAAGTGGCAGTGCTCATTAGGGACAAACAAGTAGATGAAAATC TCAGGTTAAAATGCGGAGAGTTCTTGTTGGTGCTCATCGGCCATGTTAACGGGAGGGAAGGGACTCCCATGGCAACTGTGCACGACGACTTGAGACGACT TCTTGGCGAGAAATCAGCATCACTGATATGGGCAGCCAGTCAATTCGGGTCGACCCTCGATCCTGAGCAGAGACTAACTGCTCTCCAAATCCAGGCTCGA AGAGTTTTGGAGTCCCTGGATCTTTACTGA
AA sequence Show only first row Show all	>Lus10041980 pacid=23153908 polypeptide=Lus10041980 locus=Lus10041980.g ID=Lus10041980.BGIv1.0 annot-version=v1.0 MLLKKPLWSVGLEEAAKESSDSSEQQQKQQASSSSEVVEELVNSLTRQRLYREVTLALRSSLRDARAEFSFLRLRGLRSILNFLRSVSLSDSTITLFSQT QSIPDLQVVPVLFQHSLKESDDVNVVESLDHILGVEPVRITSPSTNAEVALALRVLEGCCLLHRESTLLAHQHKAIQVLMHILSTRGVLEQGACLDALVA IMLDSSANQVDFEACNGIEEVAVLIRDKQVDENLRLKCGEFLLVLIGHVNGREGTPMATVHDDLRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQAR RVLESLDLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10041980 [exp]	0	1
AT3G27020		YSL6	YELLOW STRIPE like 6 (.1)		Lus10041544 [exp]	6.2	0.9230
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Lus10040572 [exp]	6.6	0.9056
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Lus10006686 [exp]	9.2	0.9176
AT3G51730			saposin B domain-containing pr...		Lus10025248 [exp]	14.1	0.9235
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	15.5	0.9184
AT3G25910			Protein of unknown function (D...		Lus10043292 [exp]	15.9	0.9124
AT4G09890			Protein of unknown function (D...		Lus10006799 [exp]	19.1	0.9005
AT4G28240			Wound-responsive family protei...		Lus10039758 [exp]	20.5	0.9227
AT5G10860		CBSX3	CBS domain containing protein ...		Lus10021675 [exp]	21.7	0.9161
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Lus10009664 [exp]	24.0	0.9164

Compare expression of checked genes

Lus10041980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.