Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49220 80 / 1e-15 Protein of unknown function (DUF789) (.1) AT2G01260 74 / 6e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT4G03420 72 / 2e-13 Protein of unknown function (DUF789) (.1) AT1G03610 71 / 3e-13 Protein of unknown function (DUF789) (.1) AT1G15030 72 / 4e-13 Protein of unknown function (DUF789) (.1) AT1G17830 67 / 1e-11 Protein of unknown function (DUF789) (.1) AT5G23380 66 / 1e-11 Protein of unknown function (DUF789) (.1) AT4G16100 64 / 1e-10 Protein of unknown function (DUF789) (.1) AT4G28150 59 / 2e-09 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 56 / 3e-08 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017987 [exp] 1129 / 0 AT2G01260 77 / 1e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10033747 [exp] 204 / 6e-57 AT1G15030 80 / 5e-16 Protein of unknown function (DUF789) (.1) Lus10031598 [exp] 168 / 2e-44 AT1G15030 63 / 2e-10 Protein of unknown function (DUF789) (.1) Lus10033707 [exp] 71 / 7e-13 AT4G03420 359 / 2e-124 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 68 / 6e-12 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 66 / 2e-11 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1) Lus10039803 [exp] 65 / 4e-11 AT1G03610 303 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 66 / 6e-11 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 64 / 2e-10 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068700 [exp] 340 / 2e-103 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 336 / 2e-101 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.013G149400 [exp] 207 / 3e-57 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 188 / 1e-53 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G155200 [exp] 79 / 1e-15 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 79 / 1e-15 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 77 / 6e-15 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 73 / 2e-13 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G124000 [exp] 64 / 9e-11 AT2G01260 384 / 1e-132 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.019G103000 [exp] 64 / 1e-10 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10041982 pacid=23153988 polypeptide=Lus10041982 locus=Lus10041982.g ID=Lus10041982.BGIv1.0 annot-version=v1.0 ATGGAATATATGTACCTGGTTTCCTCACCATCAGATTACTTCCTTGGAGCTAAGCCTATTCCTCTTCATCACCCGATCAGGTGTAATTCGGCCGAAAACA CGATCTTTAGAGCAGCAGATGGTTTGATTAGTAAGAAGGGATGTAAGGAAATGAGCCCACCACCTAGCAAGACTGACAAGAAGAGCTTGAAGAGGAAGAC GAGAAAGAAGGCGAAACGAAACAAAAACCATCATAATGCTGTATCGTCATCCCACGATACCTCTGCTGGCTCGAGAGTCCTGGATGAGCCGAACAACAAT GGACGCTCGAACGCTGAAAAGTCCGGGACTTCACTCCCGGACGTTTCAGCACAATCAGGTTTCAGTTCAAGGAAGAGCCATGCCCGTCGCAAGAATTTGT TGAGTGGCACGACTGCTGATTCTCGAACACTTTTGCCACGAAAGCAACTCAAGGGTTCGTCTAATACCGCAATCAGAACTGGAAAGGAAAACAGCTACTC AGTCTGGCAGAAGGTTCAAAGGAACGACTTATTACCGGTAAGTGGAAACGATATAGACAAGGGATCCTCCATTTGTTCGAAGCTTAAAGACGAAGCTTCA TTCAAAAGGAAGGTAAGCAAAGAAAAAGCTTGTAAGAAGTCGAAAAGGAAGAGTCTTTCCTTCAAAGAAGGAATCCTGCAGCAGAATGGAATGTTGGTAA AACGTGTTCCTAGGGTCTCTTATAAGAATAGCTACCCCGGGTCCGGGTTGCAGACCCTCGGAGTTGAGTATGTTAATCACGATACCGAGGATAAGGAGAC ATCGTTGTCGGAGTTGACTAAGGTTGACCAAACAAGTAAAGAAGCTGAAACTGCAGAGTTCTACAAACATGGATCTGTTCTGCAAAAGTGGATACCTATA GGGATAATAAAGGAACCTGAACTGTCAACCTCTGTTGGATTCAAGAAGTTGAATTGGGATGTCGAAATACCTGATCCAGATCTGGAGACAGTTGCTGAAG TGGAAGATTGCATATCTCTTGCAGATGAATGTGTTGAGAAGACAACGAGTGATTCAGACGATTCTTCCCCATCTGGGGAAGCCTGCTTAGTGATTCCAAC CTGTTATAAGGACCTGGCTAGTTTGAGAGTTAGATCAGAAGGAATCGTGCAAGCAGTGCACGATACAATTACGGTGCAACTGGCATCCGAAGCGATAGAG TTCGCCACTGGATGTCCGATTGCAGAGTTCGAAAGACTTCTCCATTCATCTTCCCCATCCGTTTCACAGTCAAACATTTCACTCCGGTCTCTATGGCACT GGTACGAGAAGCACGGAATCTACGGGGTAGAAGTCAAAGCAGAAGATCATCAAAACTCAATTAGATTAGGGATTGACCAACTTTCGTTTCGTGCTTATTT TGTCCCGTTTCTATCAGCAATTCAGCTGTTTGGGAAGGAAAGAAAAGAAACCCGGAACAACGATTCAGTACTTCCTACACTTTCTGCAAATGCAACTGAC AATGAATGGACAGATGATGGAGAGCTTCTATTCGAGTACTTCGAATTCGAAAGGCCTCAGCTAAGACAGCCACTATATGAGAAGATACATGAACTGGCAA GAGGTGATGGACTTTCGGGATGCAAGATGTTCGGTAACCCATCTACATTGGTCTTGACGAGTCTACAAGAACTGCATAAAAAATCCTGGTACTCGGTAGC ATGGTACCCTATATACAAGATACCTGACGGCAGCTTACGAGCTGCATTCTTGACATATCACTCATTCAGACATCTGGTTGAAAGAAAACCTGAACTCGGT TATCCTACCATGGTCTGTCCAGTTGTGGGTCTTCAGAGTTATAATGCTCAGGATGAATGCTGGTTCCAGCCACGGCATAGTGCCGGAGATCACCAGACAG AAGGAATGTTAGGATCTAGTGAAGTCCTGAAGGAGAGACTGAGAACACTTAAAGAGACAGCATGTTGCATGGCAAGAGCCACGGTAAAGAAAGGCGAAGA GAAACCTGCGAAAAATTGGCATCCCGACTATGAGTTTTTCCTCTCCAGGCAACTCTACTGA
AA sequence Show only first row Show all	>Lus10041982 pacid=23153988 polypeptide=Lus10041982 locus=Lus10041982.g ID=Lus10041982.BGIv1.0 annot-version=v1.0 MEYMYLVSSPSDYFLGAKPIPLHHPIRCNSAENTIFRAADGLISKKGCKEMSPPPSKTDKKSLKRKTRKKAKRNKNHHNAVSSSHDTSAGSRVLDEPNNN GRSNAEKSGTSLPDVSAQSGFSSRKSHARRKNLLSGTTADSRTLLPRKQLKGSSNTAIRTGKENSYSVWQKVQRNDLLPVSGNDIDKGSSICSKLKDEAS FKRKVSKEKACKKSKRKSLSFKEGILQQNGMLVKRVPRVSYKNSYPGSGLQTLGVEYVNHDTEDKETSLSELTKVDQTSKEAETAEFYKHGSVLQKWIPI GIIKEPELSTSVGFKKLNWDVEIPDPDLETVAEVEDCISLADECVEKTTSDSDDSSPSGEACLVIPTCYKDLASLRVRSEGIVQAVHDTITVQLASEAIE FATGCPIAEFERLLHSSSPSVSQSNISLRSLWHWYEKHGIYGVEVKAEDHQNSIRLGIDQLSFRAYFVPFLSAIQLFGKERKETRNNDSVLPTLSANATD NEWTDDGELLFEYFEFERPQLRQPLYEKIHELARGDGLSGCKMFGNPSTLVLTSLQELHKKSWYSVAWYPIYKIPDGSLRAAFLTYHSFRHLVERKPELG YPTMVCPVVGLQSYNAQDECWFQPRHSAGDHQTEGMLGSSEVLKERLRTLKETACCMARATVKKGEEKPAKNWHPDYEFFLSRQLY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01260			Protein of unknown function (D...		Lus10041982 [exp]	0	1
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Lus10008180 [exp]	1.7	0.7388
					Lus10040033 [exp]	8.1	0.6659
					Lus10007169 [exp]	9.3	0.6605
AT1G61330			FBD, F-box and Leucine Rich Re...		Lus10018433 [exp]	11.7	0.6388
AT5G20140			SOUL heme-binding family prote...		Lus10035075 [exp]	13.1	0.6016
AT4G21390		B120	S-locus lectin protein kinase ...		Lus10032836 [exp]	15.5	0.6266
					Lus10010827 [exp]	17.0	0.6266
					Lus10022511 [exp]	18.3	0.6266
AT4G23310		CRK23	cysteine-rich RLK (RECEPTOR-li...		Lus10015095 [exp]	19.4	0.6060
AT2G36690			2-oxoglutarate (2OG) and Fe(II...		Lus10024231 [exp]	19.6	0.6266

Compare expression of checked genes

Lus10041982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.