Plant FIBer expression Database

Lus10041983 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G48380 281 / 3e-92 HYP7, RHL1 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10017988
[exp]
580 / 0 AT1G48380 297 / 2e-98 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G069400
[exp]
307 / 3e-101 AT1G48380 281 / 9e-92 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
PFAM info
Representative CDS sequence
>Lus10041983 pacid=23153924 polypeptide=Lus10041983 locus=Lus10041983.g ID=Lus10041983.BGIv1.0 annot-version=v1.0
ATGGTGCGAGCTTCCAAGAAAGCTTCCGCGGCGGAGCAGAACCAGAACCCGGACGCTCTAGAGCGGAAGCGATTGAAGAAGCTCGCCTTCTCCAACGGCC
TCCTGGCGCCGACTCCGGCAAATAACTACGCGCCGCTAGCCCCTGCCAAGACTGTGTTCAAGCATCATGGCAAGGACATCCTGCGCAAGTCTCAGAGGAA
GAATCGATTTCTCTTCTCGTTTTCTGGTCTGTTGGCTCCGATTGCCGGGGGCAAGATTGGGGAGCTCAAGGATTTGGGGACCAAAAACCCGATTCTCTAC
CTCGATTACCCTCAGGGCCGGATGAAGTTGCTTGGGACTATCGTCTATCCGAAGAACCGGTACTTAACTTTGCAGTTCTCGAGGGGTGGGAAGAATGCGA
CGTGTGAGGATCACTTTGACAACATGGTCGTGTTTTCTGAAGCATGGTGGATTGGAACTAAGGAGGAGAATCCAGACGAATCTAGGTTTGATTTCCCCAA
AGAAGTGATTCAGGAGCAGAAGGCTGATTATGACTTTCAAGGTGGAGCAGGTGCTGAACCAATGAATAAGATGGTTGTGAATACAAATGTCGCAAAGGAT
GCCGAAGAAGATTCTCCAGAATGTGAGCTTGAAAAGTATGGGTCCGATGATATGGATTTGAAAGAAGTTACACCTATTCGACACTTGGAGAGAACTGCTG
GGAGGAAATTCAGGGTTACTGAGGTTTCCTCCGAAGACAATTCTGGGGAAACTGATGTTGGCCCATCTAAGGATGTGGAAGAAGAAGAAGAGGAAGAGGA
AAGAGAAGAAAAAGCAAGTACTCCATTCAACACTGATTTCAATGATTCAAAAGATGGAGTTTGCTTGTCTGCTCCAGTTGAAGCATTTGAAATGTCAGAG
TTGAAACCCAAAAGATCATCCAAGTCTAATGCTCCAGCATCAGTATCTACTAAAGCTTCAGGCACCATTGGAGACAATTTGGAGCTCAAAGCTTCCAAAA
GGAAGCTTAATCTTGATGAGGGATCTATGAAAACAGGAAAAGTGACCAGATCTGGAAAATCAGATTCAGGAATGAACGCAAAGAAGAAGGTAGTCCATGA
GATCGAAGAGGATGATATTGAAGAATTCTCGAGCTCCTCACAGGTGAGATACTCATACTCTTCTTCAGAATGTCCATGA
AA sequence
>Lus10041983 pacid=23153924 polypeptide=Lus10041983 locus=Lus10041983.g ID=Lus10041983.BGIv1.0 annot-version=v1.0
MVRASKKASAAEQNQNPDALERKRLKKLAFSNGLLAPTPANNYAPLAPAKTVFKHHGKDILRKSQRKNRFLFSFSGLLAPIAGGKIGELKDLGTKNPILY
LDYPQGRMKLLGTIVYPKNRYLTLQFSRGGKNATCEDHFDNMVVFSEAWWIGTKEENPDESRFDFPKEVIQEQKADYDFQGGAGAEPMNKMVVNTNVAKD
AEEDSPECELEKYGSDDMDLKEVTPIRHLERTAGRKFRVTEVSSEDNSGETDVGPSKDVEEEEEEEEREEKASTPFNTDFNDSKDGVCLSAPVEAFEMSE
LKPKRSSKSNAPASVSTKASGTIGDNLELKASKRKLNLDEGSMKTGKVTRSGKSDSGMNAKKKVVHEIEEDDIEEFSSSSQVRYSYSSSECP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G48380 HYP7, RHL1 HYPOCOTYL 7, root hair initiat... Lus10041983
[exp]
0 1
AT1G78770 APC6 anaphase promoting complex 6 (... Lus10012876
[exp]
6.9 0.8111
AT3G12280 RB1, RBL1, RBR1... RETINOBLASTOMA 1, RETINOBLASTO... Lus10026154
[exp]
14.2 0.7978
AT2G39990 AteIF3f, EIF2 Arabidopsis thaliana eukaryoti... Lus10028272
[exp]
20.2 0.7757
AT2G31580 tRNAHis guanylyltransferase (.... Lus10041070
[exp]
24.7 0.7636
AT4G11420 ATTIF3A1, ATEIF... eukaryotic translation initiat... Lus10015201
[exp]
25.5 0.7456
AT1G09010 glycoside hydrolase family 2 p... Lus10029917
[exp]
27.2 0.7742
AT3G09080 Transducin/WD40 repeat-like su... Lus10017180
[exp]
31.7 0.7945
AT5G39710 EMB2745 EMBRYO DEFECTIVE 2745, Tetratr... Lus10027914
[exp]
31.9 0.7044
AT3G07610 IBM1 increase in bonsai methylation... Lus10015260
[exp]
34.5 0.7882
AT5G58003 CPL4 C-terminal domain phosphatase-... Lus10036277
[exp]
35.8 0.7550

Lus10041983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.