Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17800 479 / 2e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G48450 458 / 5e-160 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT1G32160 298 / 7e-98 Protein of unknown function (DUF760) (.1) AT3G07310 186 / 8e-55 Protein of unknown function (DUF760) (.1) AT5G48590 162 / 3e-46 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017989 [exp] 738 / 0 AT3G17800 486 / 5e-171 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10035392 [exp] 335 / 5e-112 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10030993 [exp] 296 / 5e-97 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 223 / 1e-70 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 184 / 9e-54 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 182 / 5e-53 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 172 / 1e-49 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 171 / 3e-49 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 161 / 2e-45 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031200 [exp] 522 / 0 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 487 / 6e-172 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.003G097400 [exp] 345 / 4e-116 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.002G247700 [exp] 184 / 1e-53 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10041984 pacid=23153665 polypeptide=Lus10041984 locus=Lus10041984.g ID=Lus10041984.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTTCTGTTGTCCAATCCGCTAGCCTTGTGTACTCGAGGCAGTCGGCTCCTCTTGGTAGATTAGGTTTCCTCTCTGCTAGTGGGCCGGATC TATTGCCGGTTTCGTCGTCCCCAATCAAGCAATTCTCCACTGGATTATGCTTGAAGTCTGGACGTAGAAATGTGTCTTTGAGAAGTAGAAGTAGAAGATC TCCAGTTGTTATTAGGGCTTCATCATCATCATCATCATCATCGTCATCACGATCTCCGAATTCGGATGGCTCGATTTCATCAATTGCTCCCCTTCAGCTG GAGTCACCAGTTGGACAGTTTCTCTCTCAGATATTAGTCAGCCACCCCCACCTTGTACCGGCAGCTGTCGAGCAGCAACTCGAGCAGCTCCAAACCGATC GCGAGGGAGAGAAGCCTAACGACGAGCCTGCTGCTCCAGGAACCGACTTGGTTCTCTACAGGAGAATTGCTGAAGTGAAGGCTAACGAAAGGAGAAAGAC ACTGGAAGAGATCCTGTACGCTTTGATTGTGCAGAAGTTCATGGATGCCAATGTATCATTGATACCTACATTGGCCCCATCGGAACAATCTAGCCAGATC GATACATGGGCGAGCAAAGAAGAAAAGAAGCTCGAACAGCTTCACTCTCCGGAAGCCTTCGAGATGATCCAGAACCACCTCACTCTCATACTAGGGAACA GACTAGGAGACCCATCCGCCGCGGCACAGATAAGCAAGCTTCGAGTAGGTCAGGTATACGCAGCTTCAGTTATGTACGGCTACTTCCTGAAGCGGGTCGA TCAGAGGTTTCAGCTCGAGAAGACGATGAAAGTCCTCCAGAGCGGAGGATCTGACAAAGCCATGGAGTTCGATGTAAAGACCAGTGGCACTGACGGTTCA TATGAAGCTGTATCTTCGTCGGCTTCCTCCCACCCGGAAGTGGCAGGAGCTTGGGCTGGCGGGATCAGTCCTGACGGGTTTGGGTCCGGGATGAAGCCCT CTCGACTTAGAAGCTACGTGATGTCGTTCGATGGAGAGACACTCCAAAGGTACGCCACGATACGATCGAAAGAAGCGGTGACCATCATCGAGAAGCACAC GGAGGCGCTGTTCGGGAGGCCGGAGATTGTGATTACGCCAGAAGGTGCCATCGATTCGTCGAAAGACGAGACAATCAAGATCAGCTTCTCTGGGTTGAAG AGGCTTGTGCTTGAGGCCGTGACTTTTGGATCCTTCCTGTGGGATGCTGAAGGGTATGTGGATTCTAGGTACCATTTTGTTATGAACTAA
AA sequence Show only first row Show all	>Lus10041984 pacid=23153665 polypeptide=Lus10041984 locus=Lus10041984.g ID=Lus10041984.BGIv1.0 annot-version=v1.0 MEAASVVQSASLVYSRQSAPLGRLGFLSASGPDLLPVSSSPIKQFSTGLCLKSGRRNVSLRSRSRRSPVVIRASSSSSSSSSSRSPNSDGSISSIAPLQL ESPVGQFLSQILVSHPHLVPAAVEQQLEQLQTDREGEKPNDEPAAPGTDLVLYRRIAEVKANERRKTLEEILYALIVQKFMDANVSLIPTLAPSEQSSQI DTWASKEEKKLEQLHSPEAFEMIQNHLTLILGNRLGDPSAAAQISKLRVGQVYAASVMYGYFLKRVDQRFQLEKTMKVLQSGGSDKAMEFDVKTSGTDGS YEAVSSSASSHPEVAGAWAGGISPDGFGSGMKPSRLRSYVMSFDGETLQRYATIRSKEAVTIIEKHTEALFGRPEIVITPEGAIDSSKDETIKISFSGLK RLVLEAVTFGSFLWDAEGYVDSRYHFVMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	0	1
AT1G47480			alpha/beta-Hydrolases superfam...		Lus10042662 [exp]	9.1	0.9488
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	10.0	0.9457
AT5G14780		FDH	formate dehydrogenase (.1)		Lus10032150 [exp]	10.9	0.9654
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10000333 [exp]	12.7	0.9675
AT1G32160			Protein of unknown function (D...		Lus10035392 [exp]	15.0	0.9652
AT3G05170			Phosphoglycerate mutase family...		Lus10031518 [exp]	15.5	0.9573
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Lus10017950 [exp]	19.7	0.9583
AT1G73480			alpha/beta-Hydrolases superfam...		Lus10009679 [exp]	20.3	0.9519
					Lus10037782 [exp]	21.0	0.9482
AT1G25370			Protein of unknown function (D...		Lus10038942 [exp]	21.6	0.9391

Compare expression of checked genes

Lus10041984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.