Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34130 1212 / 0 STT3B staurosporin and temperature sensitive 3-like b (.1) AT5G19690 696 / 0 STT3A staurosporin and temperature sensitive 3-like A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017990 [exp] 1274 / 0 AT1G34130 1264 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Lus10011124 [exp] 397 / 2e-126 AT5G19690 1266 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10043241 [exp] 374 / 5e-118 AT5G19690 1233 / 0.0 staurosporin and temperature sensitive 3-like A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036300 [exp] 1241 / 0 AT1G34130 1256 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.015G028300 [exp] 1215 / 0 AT1G34130 1245 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.018G086000 [exp] 714 / 0 AT5G19690 1157 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Potri.006G163566 [exp] 0 / 1 AT5G19690 209 / 9e-63 staurosporin and temperature sensitive 3-like A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02516 [flax] [poplar] STT3 Oligosaccharyl transferase STT3 subunit
Representative CDS sequence Show only first row Show all	>Lus10041985 pacid=23153888 polypeptide=Lus10041985 locus=Lus10041985.g ID=Lus10041985.BGIv1.0 annot-version=v1.0 ATGGCCGTCACCACCAACGGCGCCGTCAACGGCACATCAAAATCCTCCTCCTCCACCACCATGCCTCCTCCTTCCTCCAATCTCAAATCAGATCTGCTCG CAAAGCTCTCATTCAAATCCCTAAAGCTGAAAACCAAGCAGCAGGAGCTCCTGATCCGCGTCTCCATCCTCGGACTCGTCTACATCCTCGCCTTCATCAC CCGCCTCTTCAGCGTCCTCCGCTACGAGTCCATGATCCACGAGTTCGACCCTTACTTCAATTATCGCACCACTCTCTACCTCACGCAGAAAGGATTCTAC GATTTCTGGAACTGGTTCGATTACGAGAGCTGGTACCCGCTGGGACGGATCGTCGGCGGGACTCTCTACCCGGGGCTGATGGTCACCGCCGCACTGATCT ACTGGACTCTCCGATTCCTCCGATTCGCAGTCCACATCCGCGAGGTCTGCGTCCTGACAGCTCCTTTCTTCGCGTCGAACACCACTATAGTGGCGTATTT CTTTGGAAAAGAGATTTGGGACACCGGAGCTGGACTCGTCGCCGCGGCGTTGATCGCGATCTGTCCTGGATACATATCGAGATCCGTCGCTGGATCTTAT GATAATGAAGCTGTGGCCATTTTCGCTCTGTTGTTGACGTTTTACCTGTTTGTTAAGGCGGTGAATACGGGGTCGTTAACTTGGTCTTTAGGTTCGGCGT TTGCGTATTTCTATATGGTTTCGGCTTGGGGAGGGTATGTGTTCATTATTAACTTGATCCCGCTCTATGTGCTGGTGTTGTTGATCACTGGGAGGTACTC GATGAGGCTGTACATTGCGTACAATTCTATGTATGTGCTGGGAATGCTGCTGGCTATGCAGATTAGGTTCGTTGGGTTTCAGCATGTGCAGTCCGGGGAG CATATGGCAGCCATGGGAGTGTTCTTCTTGATGCAGGTGTTTTACTTCTTAGACTGGGTCAAGTACATGTTGAGCGATAAAAGGCTGTTTGAGACCTTCT TAAGGATCACTGTGACTTGCACAGTGGGAGTAGCTGCTGTTGCTCTGGGAGTTGGTACAGCATCTGGGTATATTTCTCCATGGGCGGGAAGATTCTACTC TCTTTTGGATCCGACCTATGCTAAGGATCACATCCCCATTATTGCTTCGGTATCTGAGCATCAGCCCACGGCATGGTCATCCTTCATGTTTGATTTCCAC ATTCTGCTTTTCCTTTTCCCCGCGGGTCTCTACTTCTGCTTCAAACGGCTGACAGATGCCACGATATTTATTGTCATGTACGGTCTCACAAGTATGTACT TTGCTGGTGTCATGGTCCGGTTGATCCTAGTTGCCACACCAGCTGTTTGCCTTATCAGCGCAATTGCAATATCTGCCACTGTGAAGAATTTGACACAGCT TTTGTGGACTAATAAGAGCAAGGTTGCCCAATCTGGTTCTTCCAAAGGAGCTAGTGGCGCAAAGGCTTCCTCTAAGGGTTTACTTGATCAATCCCAGCCA TTTCAAAAGAATGGGGCCATTGCATTGCTTTGTGGTGTCTTGTACTTACTTAGTAGGTATGCAACTCACTGTACGTGGGTTACATCAGAGGCCTATTCAT CTCCTTCGATTGTGTTGGCTGCGAGGGGTGCCCATGGCAATAAGGTCATCTTTGATGATTACCGTGAGGCATACTTTTGGCTCCAGCAGAATACTCCTAC AGACGCTAAGATTATGTCATGGTGGGATTATGGTTACCAGATTACAGCCATGGGAAATAGAACGGTTATTGTTGACAACAATACCTGGAATAATACACAC ATTGCAACTGTTGGGCGTGCAATGTCATCTTATGAAGACGAGGCATATGAGATCATGAGAGAACTTGATGTGAACTATGTCTTAGTTGTTTTTGGTGGAG TTACTGGTTACTCATCTGACGACATCAACAAGTTTTTGTGGATGGTAAGAATTGGAGGTGGAGTATTCCCAGTAATTAAGGAACCCGATTACCTTGTCAA TGGTGAATATCGCGTTGATAAAGGTGCTGCTCCCAAGATGTTGAACTGTCTCATGTATAAACTGTGCTATTACCGATTTGGCGAGCTGATGACGGAGTAT GGTAAACCTCCAGGATTCGATCGAGCGAGAGGAGTGGAGATAGGGAATAAGGACATAAAGCTGGAGCATCTGGAAGAGGCATTCACTACAAGCAACTGGA TCGTTCGGATATACAAGGTGAAGCCACCAAACAACAGGTGGTAA
AA sequence Show only first row Show all	>Lus10041985 pacid=23153888 polypeptide=Lus10041985 locus=Lus10041985.g ID=Lus10041985.BGIv1.0 annot-version=v1.0 MAVTTNGAVNGTSKSSSSTTMPPPSSNLKSDLLAKLSFKSLKLKTKQQELLIRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLYLTQKGFY DFWNWFDYESWYPLGRIVGGTLYPGLMVTAALIYWTLRFLRFAVHIREVCVLTAPFFASNTTIVAYFFGKEIWDTGAGLVAAALIAICPGYISRSVAGSY DNEAVAIFALLLTFYLFVKAVNTGSLTWSLGSAFAYFYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYIAYNSMYVLGMLLAMQIRFVGFQHVQSGE HMAAMGVFFLMQVFYFLDWVKYMLSDKRLFETFLRITVTCTVGVAAVALGVGTASGYISPWAGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFH ILLFLFPAGLYFCFKRLTDATIFIVMYGLTSMYFAGVMVRLILVATPAVCLISAIAISATVKNLTQLLWTNKSKVAQSGSSKGASGAKASSKGLLDQSQP FQKNGAIALLCGVLYLLSRYATHCTWVTSEAYSSPSIVLAARGAHGNKVIFDDYREAYFWLQQNTPTDAKIMSWWDYGYQITAMGNRTVIVDNNTWNNTH IATVGRAMSSYEDEAYEIMRELDVNYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLCYYRFGELMTEY GKPPGFDRARGVEIGNKDIKLEHLEEAFTTSNWIVRIYKVKPPNNRW

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34130		STT3B	staurosporin and temperature s...		Lus10041985 [exp]	0	1
AT4G34200		EDA9	embryo sac development arrest ...		Lus10019818 [exp]	1.0	0.9689
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Lus10012697 [exp]	2.6	0.9410
AT5G63840		PSL5, RSW3	RADIAL SWELLING 3, PRIORITY IN...		Lus10020887 [exp]	2.8	0.9517
AT1G72480			Lung seven transmembrane recep...		Lus10013162 [exp]	3.0	0.9552
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10014330 [exp]	3.5	0.9592
AT5G12970			Calcium-dependent lipid-bindin...		Lus10031244 [exp]	3.5	0.9471
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Lus10026039 [exp]	3.9	0.9513
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Lus10004937 [exp]	4.9	0.9378
AT1G72480			Lung seven transmembrane recep...		Lus10008125 [exp]	7.1	0.9352
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10022911 [exp]	12.8	0.9350

Compare expression of checked genes

Lus10041985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.