Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17860 154 / 9e-44 ZIM TIFY6B, JAI3, JAZ3 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) AT1G48500 77 / 6e-16 ZIM TIFY6A, JAZ4 TIFY DOMAIN PROTEIN 6A, jasmonate-zim-domain protein 4 (.1.2.3) AT1G70700 48 / 3e-06 ZIM TIFY7, JAZ9 JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY domain/Divergent CCT motif family protein (.1.2) AT1G19180 45 / 1e-05 ZIM TIFY10A, JAZ1 jasmonate-zim-domain protein 1 (.1.2) AT1G74950 43 / 0.0001 ZIM TIFY10B, JAZ2 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) AT5G13220 42 / 0.0002 ZIM JAS1, TIFY9, JAZ10, AT5G13220 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) AT4G14713 42 / 0.0006 ZIM TIFY4A, PPD1 PEAPOD 1, TIFY domain/Divergent CCT motif family protein (.1.2) AT4G14720 41 / 0.0007 ZIM TIFY4B, PPD2 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017991 [exp] 635 / 0 AT3G17860 189 / 3e-56 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031333 [exp] 260 / 2e-83 AT3G17860 155 / 8e-44 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Lus10031907 [exp] 238 / 1e-71 AT3G17910 378 / 5e-125 SURFEIT 1, EMBRYO DEFECTIVE 3121, Surfeit locus 1 cytochrome c oxidase biogenesis protein (.1) Lus10013166 [exp] 44 / 8e-05 AT1G74950 118 / 2e-32 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10008129 [exp] 44 / 0.0001 AT1G74950 114 / 1e-30 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10036584 [exp] 43 / 0.0002 AT1G74950 64 / 9e-12 JASMONATE-ZIM-DOMAIN PROTEIN 2, TIFY domain/Divergent CCT motif family protein (.1) Lus10039911 [exp] 43 / 0.0003 AT1G19180 161 / 3e-48 jasmonate-zim-domain protein 1 (.1.2) Lus10027648 [exp] 42 / 0.0004 AT1G19180 159 / 3e-47 jasmonate-zim-domain protein 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044900 [exp] 240 / 3e-76 AT3G17860 235 / 2e-74 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.015G035800 [exp] 222 / 5e-69 AT3G17860 219 / 5e-68 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.008G133400 [exp] 120 / 4e-31 AT3G17860 169 / 1e-49 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.010G108200 [exp] 96 / 4e-22 AT3G17860 180 / 7e-54 JASMONATE-INSENSITIVE 3, jasmonate-zim-domain protein 3 (.1.2.3) Potri.003G165000 [exp] 44 / 4e-05 AT5G13220 167 / 2e-52 TIFY DOMAIN PROTEIN 9, JASMONATE-ASSOCIATED 1, jasmonate-zim-domain protein 10 (.1.2.3.4) Potri.018G033700 [exp] 44 / 0.0002 AT4G32570 191 / 9e-57 TIFY domain protein 8 (.1) Potri.005G214300 [exp] 42 / 0.0004 AT4G14720 153 / 1e-43 PEAPOD 2, TIFY domain/Divergent CCT motif family protein (.1) Potri.006G217200 [exp] 41 / 0.0007 AT5G20900 126 / 3e-36 jasmonate-zim-domain protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [flax] [poplar] CCT PF09425 [flax] [poplar] Jas_motif Jas motif CL0281 [flax] [poplar] PF06200 [flax] [poplar] tify tify domain
Representative CDS sequence Show only first row Show all	>Lus10041986 pacid=23153484 polypeptide=Lus10041986 locus=Lus10041986.g ID=Lus10041986.BGIv1.0 annot-version=v1.0 ATGAGGAACCCAGGAGGATCCCAGTGGTCGTTTTCGAACAAGGTTTCTGCAGTTCCACAGTTCTTGTCATTTCAGACTGCTCCTGATGAGAAACCAAGGA AAGGCATTTATGATCATCCAATAGCCTCCTCAAACTATATTTCTATCTCAGGCGCTGCTGACACTTATGATTCCACCACCAAAAGAGCCCCTGCCGTCAG GCAGAAACATTGGTATACCGATAGAGAAGCTGGAAGCCATCGCGCAGTCGCAGCTGCTCGTCCCGTGCAGAAGCACATCGAAGCATTCCCGGTTGGAAGC AACCAAGATATCAGAATGTTCCCCTTTTCCAACCAGAAAAGCCAACAAGTGCCTGTTTCTCTAAGCACTCCTACTCTACATTCCCATTTTCCTTCCTCTG CACAGACCGGATTTCGAAACTCGATCACCATACACCAACAACAACAACGTCCTATTGGTGGAGTTCCGATAACAACACCGATTTCTGCTGTTCCTGCCAC AACGAGCTCTGTTATCGGTACTACCGAGCTTAGGAACAACCCTAAGATCTCTGCTTGTCCAGCCCAGTTAACCATCTTTTACAATGGTTCCGTGTGCGTA TATGATGACATTTCCCCTGAAAAGGCACTAGCTGTTATGTCCATGGCTAGAAGTGGATCACCTCCAGTACTGCATAACAAGACAGCTTCTTCAAATGCGC TTTTGAAACTGCAGTCTGAACTCCGGAGCCCTCTTCTTTCCTTAGATAATCACCATCATCGCCTTGTTGGGAACAAATCCAGCAACACCCCTGCTGGTTC AAGCATGCCGAGTGCCATTTCAGTAAGCTCGAGTACCAGCAGCGAATCCGGAACGACGAAATCTCGAGTGGGATCATCTAGCATCTCGCACGCCGAGCCT TCCTCTTCTAAGCAAATCACTTCCTCGGTAGCTGCTTCAGCTGCCAATATTCTAGCTCCTTCAGGCCTACCGCAGGTTCGAATCCCTCAGGCTCGCAAGG CATCCTTGGCTCGATTTCTGGAGAAGCGAAAGGAAAGGGTGACGAGTTCATCCCCATACGCCATGGGGAAGAAATCCGGGGAAGGAGATGTATGTGCCTG A
AA sequence Show only first row Show all	>Lus10041986 pacid=23153484 polypeptide=Lus10041986 locus=Lus10041986.g ID=Lus10041986.BGIv1.0 annot-version=v1.0 MRNPGGSQWSFSNKVSAVPQFLSFQTAPDEKPRKGIYDHPIASSNYISISGAADTYDSTTKRAPAVRQKHWYTDREAGSHRAVAAARPVQKHIEAFPVGS NQDIRMFPFSNQKSQQVPVSLSTPTLHSHFPSSAQTGFRNSITIHQQQQRPIGGVPITTPISAVPATTSSVIGTTELRNNPKISACPAQLTIFYNGSVCV YDDISPEKALAVMSMARSGSPPVLHNKTASSNALLKLQSELRSPLLSLDNHHHRLVGNKSSNTPAGSSMPSAISVSSSTSSESGTTKSRVGSSSISHAEP SSSKQITSSVAASAANILAPSGLPQVRIPQARKASLARFLEKRKERVTSSSPYAMGKKSGEGDVCA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10041986 [exp]	0	1
AT3G17860	ZIM	TIFY6B, JAI3, J...	JASMONATE-INSENSITIVE 3, jasmo...		Lus10017991 [exp]	1.0	0.9764
AT2G15220			Plant basic secretory protein ...		Lus10019807 [exp]	2.4	0.9503
AT5G05350			PLAC8 family protein (.1)		Lus10001260 [exp]	3.5	0.9351
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10039493 [exp]	8.1	0.9291
AT1G16670			Protein kinase superfamily pro...		Lus10042460 [exp]	11.7	0.9129
AT3G07310			Protein of unknown function (D...		Lus10003162 [exp]	15.3	0.9342
AT1G30755			Protein of unknown function (D...		Lus10013554 [exp]	16.0	0.9254
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10033366 [exp]	16.0	0.9356
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10042282 [exp]	16.1	0.9104
AT5G10530			Concanavalin A-like lectin pro...		Lus10007079 [exp]	16.1	0.9400

Compare expression of checked genes

Lus10041986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.