Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17920 350 / 2e-106 Outer arm dynein light chain 1 protein (.1.2) AT1G48540 185 / 8e-48 Outer arm dynein light chain 1 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017994 [exp] 1476 / 0 AT1G48540 685 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Lus10041989 [exp] 76 / 7e-17 AT3G17920 64 / 3e-14 Outer arm dynein light chain 1 protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045300 [exp] 544 / 6e-177 AT3G17920 917 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.015G036300 [exp] 514 / 6e-166 AT1G48540 867 / 0.0 Outer arm dynein light chain 1 protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041988 pacid=23154027 polypeptide=Lus10041988 locus=Lus10041988.g ID=Lus10041988.BGIv1.0 annot-version=v1.0 ATGGCGATCGTCACCGGCGATCGCTACTTGGACAAGCTGGTCACCTTCGTAGAGCAGCACGCCGGCCCTCTGATCGAATCCTCCCTCGTTCTCAAGCTTA ACCCGGCGGGATTCTACTGTGAGTCGAGTCCTGCTCTTCTTCTTCCTTATACTGTATGTTTGGATTATTTCGTATGTGGTGAAATGAATTGTGATGGTGG ATTGTCGAATTCAAAAGAAGGTTCAAAAGCAGGACCTCAATGGAGTATTTTAAGACTTCTTGTTGATGAGGATGCTCTACGGCATGTGTTTGCGAGCAGG ATTGTGGACATCAAGGACTCTCCACAATGGAACAAGTTGACGTTTGTGTCATGCGCTTCCAATCGACTAATTTTGATGGACGAGTCTCTGCAACTTCTTC CTGCTGTCGAGACTCTTGATCTGAGTCGAAATAAGTTCTCTAAAGTTGACAATCTGCGGAAATGCGTCAAATTGAAGCACCTGGATCTTGGATTCAATCA TCTGAGGAGAATTGATCCATTTCGCCAGTTGAAGCTAGATGACAAGCCAATCAGCACAAGGGAGTACTGGGAGAGACATATCATGATCGCCAGCCGACAC AAGCGGCCTGCTAGCTTTGGGTTTTATTCTCCTGCTAAAGACGATGCTTTGGAAAATGGCTGTTTCAACAAGAAAAAGCAAAAGGTATCTCGTCTGGCCT CAATCAAGAGTAATGAAGACAGTATATCTTCTCTGTCCGATCAGGAATCTTCCTCTCACAATCTTGAAAATCAAAGCAAGGAGGAGAACACAAAATCTGA TGATGAAGCTGAGATTTTCGATTTAATTAACAGAGTTGAACTCATGAAGAAAGAACGCTCCTCTCTTTGGTTGAAAGAATTAAAGGAGTGGATGGATCCT GAACCTGTGAAGTCGACGGATTCCAGTATCTATAATGGCCCCATGTCGGACAATTCAAAAGGAATCAAGGAAGAGAACAAAGGAAGAGAGAAGCATCAGG CAGAAAGGTCGAGATTTACCTCTGACTATCTTCAAGCTTCTGAAGACGAGACTAGCACCAATGTTTTTGATTCTGACAGTTCCTTTATTGACATGCATAG TGATTTACATGGTGGGCCTGCAATGGAGGGTGCTCGAAGGAAGATGCTGAAGTCCAGGTATGAAGGGTTAACTTCTCCATCTATGCCTGAGAATTCACAT CTTGATAACTCGTCCATCCCAAGAGGCTGGGGGCTGGTTGAAAATGTTAGATTATCACCATTGACCACCATAGATGATGCAACCGAATCTAATTGTTCTT CGAATTTCCATGGGTCTCCGCCTCATTACCAAAAGGACCTCTTACGCCGTCGCAATCACCTTGTGGAGGAAATTATGCAGTTTTCGGCAGGGTCCTATTC TATAGTATCATCTGATACAGATACAACTGGCAGTGAAGATGAGTTTTATGGTGTTGGGCATCCTATGTCTGAAGTTGATGGTGGATATCTGCAGACTGAA GAAAACTGTAATCCCAACCTTTCCAGGATATCACTTTCAGTAGGCAATTGTGAAAAGTGTGGCAAAGGAAATTATATGCATCATACAGGAAGCGACAAAT GCTTACTTGATTCTCATTCTGAACAAACCTCTAGCGTATCAGAAATAGCAGATATACAGCACCATGGTTCAGTTGCAGTCTCTTACAATGGCGAAGTTCC TTGTTCTGCTGACCAAGAGGCTCATTGGGTGGAAAAGAGAAAAAACAGAAGGAAACCAAGGAGAAAATGTCAAATAGCTGAAAATTTAGATGAGTGTACT GTGAGATCAGACAAGTCTAATGAAAGTTCAGATACTTTGGATTGCACACAACAAAATCAAAGTGAGGAAATAGTTGAAGGAAATGGTATTCTTGAAGCCA TTGATAAAAAGTGGTTGCAGACAAGTGCTTTCTCGTCGGTACGTGCAACTGTTGAGAGATCTTCTGAAAGTTCTGTAGAGAAATACTTCAATGAGACTGT TGCCGATTCTGCATGTAACGAGACCTGTCTTTATTTCGTTTCCTGCAATTGTGTTCTTGAGCCTGAAGCATCAACTAAAGAAAGTGAAGTTGTGTTAATA CGGAGCAGTGAGAGCAAGTTGTATTTGATGCTTGTTGGTGTAGCATTGAATGATGCAGGAAATACTTTTACCACGTTACATACGCACAAACTTGAAGATG TTAGAGAAGTCACAACCGGCATTGGACTTCAGGTCGTGAGGGTACTTATCCAGAGGGAAGAAGCTTACTTGTTTCTAACCAGGAGCATGGAGAAACTGTG GCGCCTCTTTTATACCTTGGATCTGTGCGGTTCCTCGACTAATGAGAATTGTTCATTACGAAGCTTGGAGCAGATTCAGCTTAATCTGTTTGAACAGCAA CTATGTGGCGGTTCAAAAATAAGCATATACCAATATTCAATGGTGCTTTTCAAAAAAGGTGCTTCGTGGGATCTGAGATCACTGTTTGTAGTTCAAGGCC ATCTACTTGTGTGCATCGAGGACCTAAAGCAGTTCGGCATCGGTCTTGAGGATCCACCTTCGACTGTCCCCTACTTCTCCCTGGATGCTCGCTGCTCGAT CAACGATATTGACAAACTGGTAATAGACACGGAAGAGAGCTGCTGCGTAATCTTGACTCTCCGAACAGTAGACACGTCGATCAAAGGGAGATTCATCGGC AAGAGTTGTCCTCGTGCAGGACGTTCGGAGTGGAAACTGAAGTGGTTCTCGTCACAAAGCCTGTCGAATTTCGTGGGATTGGTTCATGCTAGCCATACGC AGTCTCCTTCTCCTTTGCTTGTAAAAAGTGTGCAATAG
AA sequence Show only first row Show all	>Lus10041988 pacid=23154027 polypeptide=Lus10041988 locus=Lus10041988.g ID=Lus10041988.BGIv1.0 annot-version=v1.0 MAIVTGDRYLDKLVTFVEQHAGPLIESSLVLKLNPAGFYCESSPALLLPYTVCLDYFVCGEMNCDGGLSNSKEGSKAGPQWSILRLLVDEDALRHVFASR IVDIKDSPQWNKLTFVSCASNRLILMDESLQLLPAVETLDLSRNKFSKVDNLRKCVKLKHLDLGFNHLRRIDPFRQLKLDDKPISTREYWERHIMIASRH KRPASFGFYSPAKDDALENGCFNKKKQKVSRLASIKSNEDSISSLSDQESSSHNLENQSKEENTKSDDEAEIFDLINRVELMKKERSSLWLKELKEWMDP EPVKSTDSSIYNGPMSDNSKGIKEENKGREKHQAERSRFTSDYLQASEDETSTNVFDSDSSFIDMHSDLHGGPAMEGARRKMLKSRYEGLTSPSMPENSH LDNSSIPRGWGLVENVRLSPLTTIDDATESNCSSNFHGSPPHYQKDLLRRRNHLVEEIMQFSAGSYSIVSSDTDTTGSEDEFYGVGHPMSEVDGGYLQTE ENCNPNLSRISLSVGNCEKCGKGNYMHHTGSDKCLLDSHSEQTSSVSEIADIQHHGSVAVSYNGEVPCSADQEAHWVEKRKNRRKPRRKCQIAENLDECT VRSDKSNESSDTLDCTQQNQSEEIVEGNGILEAIDKKWLQTSAFSSVRATVERSSESSVEKYFNETVADSACNETCLYFVSCNCVLEPEASTKESEVVLI RSSESKLYLMLVGVALNDAGNTFTTLHTHKLEDVREVTTGIGLQVVRVLIQREEAYLFLTRSMEKLWRLFYTLDLCGSSTNENCSLRSLEQIQLNLFEQQ LCGGSKISIYQYSMVLFKKGASWDLRSLFVVQGHLLVCIEDLKQFGIGLEDPPSTVPYFSLDARCSINDIDKLVIDTEESCCVILTLRTVDTSIKGRFIG KSCPRAGRSEWKLKWFSSQSLSNFVGLVHASHTQSPSPLLVKSVQ

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	0	1
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	1.0	0.9410
AT1G10210		ATMPK1	mitogen-activated protein kina...		Lus10033197 [exp]	3.9	0.8731
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	4.0	0.8509
AT5G27950			P-loop containing nucleoside t...		Lus10018999 [exp]	4.2	0.8417
AT5G40450			unknown protein		Lus10022266 [exp]	4.9	0.8363
AT1G79630			Protein phosphatase 2C family ...		Lus10000402 [exp]	5.0	0.8133
AT1G14020			O-fucosyltransferase family pr...		Lus10036785 [exp]	10.2	0.8083
AT1G36050			Endoplasmic reticulum vesicle ...		Lus10036449 [exp]	12.2	0.8103
AT5G18480		PGSIP6	plant glycogenin-like starch i...		Lus10027949 [exp]	12.3	0.8782
AT3G12590			unknown protein		Lus10001698 [exp]	14.0	0.8288

Compare expression of checked genes

Lus10041988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.