Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17810 686 / 0 PYD1 pyrimidine 1 (.1) AT5G23300 45 / 5e-05 PYRD pyrimidine d (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017995 [exp] 870 / 0 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030600 [exp] 727 / 0 AT3G17810 709 / 0.0 pyrimidine 1 (.1) Potri.012G043300 [exp] 488 / 1e-174 AT3G17810 468 / 9e-167 pyrimidine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01180 [flax] [poplar] DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10041990 pacid=23153487 polypeptide=Lus10041990 locus=Lus10041990.g ID=Lus10041990.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTGTGTTTCACGTCTCAACCACTAAGCTACCGCCGGAATCCCAGGTTGGTTCAGAATCGGCGCGGAGTCGGTTTCTGCAACTTCAAAGCTC TGGCTGTCGGAGGGAATGGAAGCGGTGCTGAGCCCGATCTGAGCGTGACCGTCAACGGATTGAAAATGCCTAATCCGTTTGTGATCGGTTCTGGTCCGCC AGGGACGAACTATACAGTGATGAAGCGTGCTTTCGACGAAGGCTGGGGTGCTGTTATTGCTAAAACTGTGTCACTAGATGCAGCTAAAGTGATCAATGTT ACTCCTCGGTACGCGAAGCTACGTGCGAATGGATCGGCCAAAGGACAGATAATTGGGTGGGAGAACATTGAGCTGATAAGCGACAGGCCATTGGAGATAA TGTTGCAAGAATTTAAGCAGTTGAAGGAAGAATATCCAGATAGGATTTTGATTGCTTCGATCATGGAGGAGTACAACAGAGCTGGTTGGGAGGAGCTCAT AGATCGTGTGGAGCAAACTGGAGTTGATGCTCTTGAAATCAATTTCTCTTGTCCTCATGGTATGCCGGAGCGTAAGATGGGTGCAGCAGTTGGGCAAGAC TGTGCACTATTGGAAGAAGTTTGCGGATGGATAAATGCTAAAGCTACTGTTCCTGTCTGGGCAAAGATGACTCCTAATATCACTGATATAACAGAGCCAG CTAGGGTGGCTCTAAAATCTGGTTGTGAGGGCATAGCAGCTATTAACACCATCATGAGTGTAATGGGAATCAATCTCAAAACTTTACGACCCGAGCCCAG TGTTGAGGGATATTCAACTCCCGGCGGGTACTCTTCAAAAGCAGTGCACCCCATCGCTCTTGCGAAAGTAATGAACATCGCCAGAATGATGAAGGCAGAG TTTAACGACGACCACTACTCACTTTCCGGCATTGGAGGCGTCGAGACAGGTGGTGATGCAGCTGAGTTCATTCTCCTCGGCGCAAGTACAGTTCAGGTGT GCACGGGAGTGATGATCCATGGATATCCCGTGGTGAAGAGACTGTGCGAGGAGCTCAAGGACTTCATGAGAACCCACAACTTCTCGTCCATCGAAGACTT CCGAGGAGCATCTTTGGAGTACTTCACGACGCACACGGACTTGGTGAGACGGCAGCAGGAAGCGATTCAGCAGAGGAAAGCAGTGAGGAAAGGGCTAAAG TCTGATAAGGAATGGACTGGAGATGGGTTCGTGGAGGAGACTGAGAGCATGGTTTCCAATTGA
AA sequence Show only first row Show all	>Lus10041990 pacid=23153487 polypeptide=Lus10041990 locus=Lus10041990.g ID=Lus10041990.BGIv1.0 annot-version=v1.0 MASLCFTSQPLSYRRNPRLVQNRRGVGFCNFKALAVGGNGSGAEPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINV TPRYAKLRANGSAKGQIIGWENIELISDRPLEIMLQEFKQLKEEYPDRILIASIMEEYNRAGWEELIDRVEQTGVDALEINFSCPHGMPERKMGAAVGQD CALLEEVCGWINAKATVPVWAKMTPNITDITEPARVALKSGCEGIAAINTIMSVMGINLKTLRPEPSVEGYSTPGGYSSKAVHPIALAKVMNIARMMKAE FNDDHYSLSGIGGVETGGDAAEFILLGASTVQVCTGVMIHGYPVVKRLCEELKDFMRTHNFSSIEDFRGASLEYFTTHTDLVRRQQEAIQQRKAVRKGLK SDKEWTGDGFVEETESMVSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10041990 [exp]	0	1
AT4G37030			unknown protein		Lus10011021 [exp]	2.4	0.8962
AT1G52800			2-oxoglutarate (2OG) and Fe(II...		Lus10013132 [exp]	2.4	0.8944
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Lus10000900 [exp]	5.5	0.8856
AT4G36380		ROT3	ROTUNDIFOLIA 3, Cytochrome P45...		Lus10041794 [exp]	7.5	0.8866
AT2G37840			Protein kinase superfamily pro...		Lus10022593 [exp]	7.7	0.8818
AT3G18820		RAB71, AtRABG3f...	RAB GTPase homolog G3F (.1)		Lus10040468 [exp]	7.9	0.8885
AT1G78850			D-mannose binding lectin prote...		Lus10000579 [exp]	8.1	0.8709
AT3G49870		ATARLA1C	ADP-ribosylation factor-like A...		Lus10019259 [exp]	10.6	0.8793
AT5G56170		LLG1	LORELEI-LIKE-GPI-ANCHORED PROT...		Lus10027120 [exp]	11.2	0.8521
					Lus10041110 [exp]	11.5	0.8699

Compare expression of checked genes

Lus10041990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.