Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 280 / 8e-90 RKL1 receptor-like kinase 1 (.1) AT3G17840 260 / 2e-82 RLK902 receptor-like kinase 902 (.1) AT5G16590 226 / 2e-69 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 223 / 2e-68 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 178 / 2e-51 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 156 / 3e-43 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 153 / 3e-42 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 145 / 3e-39 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT5G24100 136 / 2e-36 Leucine-rich repeat protein kinase family protein (.1) AT1G60630 134 / 3e-35 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017996 [exp] 453 / 3e-157 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10031337 [exp] 332 / 1e-109 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 223 / 2e-68 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10004040 [exp] 215 / 4e-65 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 204 / 4e-61 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 166 / 3e-48 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10021673 [exp] 164 / 3e-46 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10035012 [exp] 164 / 4e-46 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033065 [exp] 159 / 1e-44 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035500 [exp] 302 / 2e-98 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 289 / 3e-93 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 213 / 1e-64 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 209 / 3e-63 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 174 / 8e-50 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G131500 [exp] 162 / 1e-45 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.013G158800 [exp] 160 / 9e-45 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 154 / 1e-42 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 152 / 1e-41 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.003G068800 [exp] 134 / 2e-35 AT3G42880 471 / 6e-159 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10041991 pacid=23153912 polypeptide=Lus10041991 locus=Lus10041991.g ID=Lus10041991.BGIv1.0 annot-version=v1.0 ATGGAGATCACCCAGCTGCTGCTCATTTCCCTATGTTGCATCCTCCTCTCCACCTCTCTTCTCCCCGTTTCGAACTCAGATCTCGCCGCCGACCGAGCAG CCCTCATCACCCTCCGCTCCGCCGTCGGCGGCCGTACTACCTATTTCTGGAACGCCACCCAGCAGAGCCCCTGCAAGTGGCCCGGAATCAAGTGCGAGCT GAACAGAGTAACAGTCCTCCGACTCCCTGGCGTCGCCCTCTCCGGCGAGCTTCCCGACGGAGTGTTCTCCAACTTGACTCAGCTCCGCACTCTCAGTCTT CGCCTCAACGCTCTCACCGGTCAGCTCCCTTCAGATCTAGCTAGCTGCACCCGTCTCCGGAACTTGTATCTTCAGGGGAACTCCTTCTCCGGCGAGATCC CGGACTTCCTATTCTCCCTCCGAAGCCTGGTCCGTCTCAACCTCGCAGAAAACAACTTCACCGGGAACTTCCCGACCGGGTTCGATAACTTGACCCGGTT GAAGACCCTTTTCGTCGAAAACAACCGTCTCTCCGGGTCGATTCCGGGTCTCAAATTCGGGAAGCTTGAGCAGTTCAACGCCTCCAACAATCTGTTGAAC GGCTCAATTCCGCAGAGGCTAAGGTCATTCGATTCGGCGTCCTTTTTGGGAAACTCCCTCTGCGGGCAGCCTCTCGACGCTTGCAATGTCGACAGCGCGC GTGGGACCGTCGTGGTACCCAGCTCGCCGGCGTCCGGGGAATCACCTACCGGGAGAAAACGGAGGCAACCCTGCGGNNNNNNNNNNNNNNNNNNNNTACT GCGTTGGTGCCGCGGCGGTTGCGGCAATGGTTGGGGGTGGTGGCAAAGATGGTAA
AA sequence Show only first row Show all	>Lus10041991 pacid=23153912 polypeptide=Lus10041991 locus=Lus10041991.g ID=Lus10041991.BGIv1.0 annot-version=v1.0 MEITQLLLISLCCILLSTSLLPVSNSDLAADRAALITLRSAVGGRTTYFWNATQQSPCKWPGIKCELNRVTVLRLPGVALSGELPDGVFSNLTQLRTLSL RLNALTGQLPSDLASCTRLRNLYLQGNSFSGEIPDFLFSLRSLVRLNLAENNFTGNFPTGFDNLTRLKTLFVENNRLSGSIPGLKFGKLEQFNASNNLLN GSIPQRLRSFDSASFLGNSLCGQPLDACNVDSARGTVVVPSSPASGESPTGRKRRQPCXXXXXXXXLRWCRGGCGNGWGWWQRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	0	1
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	1.0	0.9585
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	2.4	0.9237
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Lus10025057 [exp]	3.0	0.8860
AT1G16520			unknown protein		Lus10031193 [exp]	4.2	0.8629
AT4G27585			SPFH/Band 7/PHB domain-contain...		Lus10032909 [exp]	6.0	0.8834
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	8.1	0.8614
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	10.2	0.8696
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	10.6	0.8512
AT3G25150			Nuclear transport factor 2 (NT...		Lus10003144 [exp]	11.8	0.8620
AT5G13520			peptidase M1 family protein (....		Lus10040362 [exp]	12.8	0.8216

Compare expression of checked genes

Lus10041991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.