Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17840 343 / 3e-115 RLK902 receptor-like kinase 902 (.1) AT1G48480 336 / 3e-112 RKL1 receptor-like kinase 1 (.1) AT5G16590 312 / 2e-103 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 306 / 6e-101 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 285 / 1e-92 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 275 / 1e-88 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 261 / 2e-83 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 252 / 7e-80 leucine-rich repeat transmembrane protein kinase family protein (.1) AT3G08680 248 / 3e-78 Leucine-rich repeat protein kinase family protein (.1.2) AT2G36570 248 / 3e-78 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017996 [exp] 484 / 5e-170 AT1G48480 772 / 0.0 receptor-like kinase 1 (.1) Lus10002299 [exp] 371 / 2e-130 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10004040 [exp] 374 / 4e-127 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031909 [exp] 347 / 2e-119 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1) Lus10031337 [exp] 344 / 4e-115 AT1G48480 771 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 325 / 2e-108 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 317 / 2e-105 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10017756 [exp] 295 / 1e-96 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035012 [exp] 276 / 4e-89 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G044600 [exp] 415 / 4e-143 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G035500 [exp] 414 / 1e-142 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.017G130600 [exp] 377 / 9e-129 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.004G086100 [exp] 375 / 9e-128 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.018G074300 [exp] 289 / 3e-94 AT2G26730 550 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 288 / 4e-94 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 286 / 2e-93 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 273 / 4e-88 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 268 / 1e-85 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.012G033200 [exp] 261 / 1e-83 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10041992 pacid=23153653 polypeptide=Lus10041992 locus=Lus10041992.g ID=Lus10041992.BGIv1.0 annot-version=v1.0 ATGGATCATCAGAGCTTGGTTCCTTTGAGGGCTTATTACTATAGTATGGATGAGAAGCTCATTGTTTATGATTACATGTCTATGGGAAGCTTGTCTGCTC TTCTTCATGGCAACAAAGGTGCCGGGAGGACTCCACTGAACTGGGAAATCCGATCTTCGATCGCCCTAGGAGCGGCTCGTGGGATCGAGTACCTTCACTC GCAAGGCAACGATGTCTCCCACGGAAACATCAAGTCCTCCAACATCCTCCTCACAGGAAACTACGAAGCTCGAGTTGCCGACTTCTTCCTTGCTCAACTC GTTGGCCCTTCGTCGACTCCCAACAGGGTGGCTGGGTACCGAGCACCGGAGGTCACCGATCCACGCAGAGTCTCTCAGAAGGCTGATGTCTACAGCTTCG GAGTAATGCTGCTAGAACTACTAACAGGGAAGGCCCCTGCGAATTCGATTCTGAACGAAGAAGGCATCGATCTCCCTAGATGGGTGCAATCCACAGTGAA GGAGGAGTGGACATCGGAGGTGTTCGATCTCGAGCTCCTTCGATACCAGAGCGTTGAGGAAGAGATGGTTCAGCTGCTGCAGCTCGGAGTGGACTGTGCG GCTCAGTACCCTGATAACCGTCCCACAATGAGTGATGTCACGGCTCGGATCGAGGAGATTTGCAGGTCTTCCAGTGCTAGAGATCCCCAGCCTGATGGAG ATGAAAGCTCTCTGCTTTAG
AA sequence Show only first row Show all	>Lus10041992 pacid=23153653 polypeptide=Lus10041992 locus=Lus10041992.g ID=Lus10041992.BGIv1.0 annot-version=v1.0 MDHQSLVPLRAYYYSMDEKLIVYDYMSMGSLSALLHGNKGAGRTPLNWEIRSSIALGAARGIEYLHSQGNDVSHGNIKSSNILLTGNYEARVADFFLAQL VGPSSTPNRVAGYRAPEVTDPRRVSQKADVYSFGVMLLELLTGKAPANSILNEEGIDLPRWVQSTVKEEWTSEVFDLELLRYQSVEEEMVQLLQLGVDCA AQYPDNRPTMSDVTARIEEICRSSSARDPQPDGDESSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	0	1
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	1.0	0.9585
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	1.4	0.9329
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	1.7	0.9032
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Lus10018739 [exp]	2.2	0.8800
AT1G52530			unknown protein		Lus10003678 [exp]	2.4	0.8745
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	4.0	0.8833
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	6.3	0.8650
AT3G57880			Calcium-dependent lipid-bindin...		Lus10012026 [exp]	10.2	0.8257
AT1G08010	GATA	GATA11	GATA transcription factor 11 (...		Lus10021466 [exp]	10.9	0.8672
AT1G16520			unknown protein		Lus10031193 [exp]	12.0	0.8293

Compare expression of checked genes

Lus10041992 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.