Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18080 103 / 1e-26 BGLU44 B-S glucosidase 44 (.1) AT3G18070 90 / 1e-21 BGLU43 beta glucosidase 43 (.1.2) AT2G44480 79 / 5e-18 BGLU17 beta glucosidase 17 (.1.2) AT2G32860 75 / 2e-16 BGLU33 beta glucosidase 33 (.1.2) AT2G25630 75 / 2e-16 BGLU14 beta glucosidase 14 (.1) AT5G44640 75 / 2e-16 BGLU13 beta glucosidase 13 (.1) AT5G42260 75 / 2e-16 BGLU12 beta glucosidase 12 (.1) AT2G44450 73 / 1e-15 BGLU15 beta glucosidase 15 (.1) AT1G61820 71 / 4e-15 BGLU46 beta glucosidase 46 (.1.3) AT4G21760 70 / 1e-14 BGLU47 beta-glucosidase 47 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009644 [exp] 105 / 4e-27 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10009013 [exp] 100 / 5e-26 AT3G18080 516 / 0.0 B-S glucosidase 44 (.1) Lus10032659 [exp] 78 / 2e-17 AT4G21760 300 / 2e-97 beta-glucosidase 47 (.1) Lus10031251 [exp] 77 / 4e-17 AT2G44450 572 / 0.0 beta glucosidase 15 (.1) Lus10024941 [exp] 77 / 5e-17 AT2G44480 602 / 0.0 beta glucosidase 17 (.1.2) Lus10022883 [exp] 77 / 6e-17 AT2G44480 599 / 0.0 beta glucosidase 17 (.1.2) Lus10018353 [exp] 76 / 2e-16 AT1G61820 629 / 0.0 beta glucosidase 46 (.1.3) Lus10037473 [exp] 75 / 3e-16 AT2G44480 590 / 0.0 beta glucosidase 17 (.1.2) Lus10026657 [exp] 75 / 3e-16 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G049300 [exp] 106 / 2e-27 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.015G041300 [exp] 105 / 5e-27 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.001G227300 [exp] 82 / 9e-19 AT2G44480 585 / 0.0 beta glucosidase 17 (.1.2) Potri.001G227400 [exp] 82 / 9e-19 AT2G44480 513 / 3e-180 beta glucosidase 17 (.1.2) Potri.001G227200 [exp] 77 / 2e-17 AT2G44480 614 / 0.0 beta glucosidase 17 (.1.2) Potri.005G059500 [exp] 72 / 2e-15 AT3G60120 517 / 8e-180 beta glucosidase 27 (.1) Potri.004G040700 [exp] 72 / 3e-15 AT5G44640 548 / 0.0 beta glucosidase 13 (.1) Potri.004G019800 [exp] 72 / 3e-15 AT4G21760 658 / 0.0 beta-glucosidase 47 (.1) Potri.T085301 [exp] 70 / 1e-14 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.001G403900 [exp] 70 / 1e-14 AT4G21760 516 / 7e-180 beta-glucosidase 47 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10041993 pacid=23153481 polypeptide=Lus10041993 locus=Lus10041993.g ID=Lus10041993.BGIv1.0 annot-version=v1.0 ATGGCTGACAAGGACGGCCGTGGGCCCAGCATTTGGTACGACTTCATCAACCAACGTCCAGAGCGCAAGGATTACGCCGATTACGCCGATTTCTGCTTCA AGACATTCAGAGACTGGGTGAAGAACTGGATGACATTCAACGAGCCGAGAGTCACGGCCGCGCTAGGATACGACGACGGCTCATTCGCTCCAGAGGAGTG CTCCACCAGAAACTGCACAACTGGAGACTCCTCCACCGAGCCTTACATTGCCACCCTATCACTTGATCCTCTCCCACGCCACCGCCGTCCAAAGATGAGA AGAATGGAGTTCCGGTTGGACCAAGGGAATGAACCGAGCAATGTGACACTTCCAAAGGCATTGCATGACACGGAGAGGATCAAGTACTACAAGGGCTACT TAGCGCAATTGAAGAAGGCGATTGACGAGACAGAGCCAACGTGA
AA sequence Show only first row Show all	>Lus10041993 pacid=23153481 polypeptide=Lus10041993 locus=Lus10041993.g ID=Lus10041993.BGIv1.0 annot-version=v1.0 MADKDGRGPSIWYDFINQRPERKDYADYADFCFKTFRDWVKNWMTFNEPRVTAALGYDDGSFAPEECSTRNCTTGDSSTEPYIATLSLDPLPRHRRPKMR RMEFRLDQGNEPSNVTLPKALHDTERIKYYKGYLAQLKKAIDETEPT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Lus10041993 [exp]	0	1
					Lus10005828 [exp]	2.4	0.7702
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10034232 [exp]	2.4	0.7820
AT1G26380			FAD-binding Berberine family p...		Lus10021289 [exp]	5.8	0.7981
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	6.0	0.8070
AT4G03170	B3		AP2/B3-like transcriptional fa...		Lus10043234 [exp]	6.5	0.7208
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Lus10040763 [exp]	10.6	0.7423
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Lus10013920 [exp]	14.8	0.7425
AT2G16730		BGAL13	beta-galactosidase 13, glycosy...		Lus10014126 [exp]	15.6	0.7425
AT5G45670			GDSL-like Lipase/Acylhydrolase...		Lus10015241 [exp]	16.2	0.7425
AT5G20260			Exostosin family protein (.1)		Lus10039980 [exp]	16.9	0.7425

Compare expression of checked genes

Lus10041993 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.