Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 537 / 0 MATE efflux family protein (.1) AT2G34360 509 / 2e-178 MATE efflux family protein (.1) AT1G73700 498 / 7e-174 MATE efflux family protein (.1) AT1G71140 392 / 3e-132 MATE efflux family protein (.1) AT1G15170 363 / 4e-121 MATE efflux family protein (.1) AT1G15150 358 / 3e-119 MATE efflux family protein (.1) AT1G15160 353 / 6e-117 MATE efflux family protein (.1) AT1G66760 350 / 3e-116 MATE efflux family protein (.1.2) AT2G04070 350 / 7e-116 MATE efflux family protein (.1) AT2G04040 349 / 1e-115 ATDTX1 detoxification 1, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017998 [exp] 767 / 0 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 537 / 0 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10001318 [exp] 454 / 1e-156 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 427 / 4e-146 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10009132 [exp] 389 / 3e-131 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10029694 [exp] 386 / 9e-130 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 384 / 2e-129 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 381 / 8e-128 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 393 / 3e-127 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 627 / 0 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 506 / 7e-177 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 504 / 3e-176 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 503 / 8e-176 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116900 [exp] 408 / 1e-138 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 386 / 3e-130 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.010G117000 [exp] 384 / 4e-129 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 379 / 3e-127 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.017G120500 [exp] 366 / 2e-122 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094700 [exp] 360 / 7e-120 AT2G04100 425 / 3e-145 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10041994 pacid=23153835 polypeptide=Lus10041994 locus=Lus10041994.g ID=Lus10041994.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGATCAGGAGCCACGTCAGCGGCGGCGGATGAGTCGGAGCAGAGGGTGCCGTTGATTAATGGCACGGCGGCTGCAGAGGAGGAGGAGAGGC TGATCAGCGAGGGGGTGATGGAGGAAGTGAAGAGACAAGTGTGGCTGGCGGGGCCGATGATAGCGGTGAGCTTGCTTCAGTACAGTTTGAACTTAATATC GGTGATGTTCGTGGGGCATCTCGGTGAACTAAGCTTGTCCTCTGCTTCCATGGCTACTTCTTTCGCGTCTGTCACTGGCTTCAGCTTACTGTTAGGAATG GCGAGTGCACTAGACACATTTTGCGGCCAAGCCTACGGAGCCAGACAGTACCACGCAATGAGCATCCACATGCAAAGAGCCATGTTGGTCCTCCTGGTCA TAAGCATTCCCTTGTCCGTCATCTGGGCGAACACGGCCCACATCCTGATCGCGGTCGGACAACAGCAGGACATCGCTGAGGGGGCAGGGACCTACGCCAC GTTCATGATCCCGAGCATCTTCGCCTACGCGATCCTGCAGTGCCAGGTCAAGTTCCTGCAGACCCAGAGCATCGTGTTCCCCATGGTGCTCTGCTCTGCC GCGGCCGCCCTCCTCCACCTCCTCCTATGCTGGCTCCTCGTGTTTAACTCCGCCATGGGAGCTCGTGGGGCCGCGGTTTCGAACTCGATCTCGAATTGGG TTAATGTGGTGTTGTTGTCCTTGTACATCAAGTTTTCTCCCTCTTGTGCCAAGACTTGGACCGGGTTTTCTAAAGAGGCTTTGGTTGGTGTTTGGGCTTT CTTGAAGCTTGCTATTCCTTCAGCCTTCATGGTCTGCTTGGAAATGTGGTCATTCGAGATGTTGGTTCTCGCGTCTGGCCTTCTGCCTAACCCGAAACTG GAGACATCCGTGCTTTCCATAAGCCTCAACACAGCAGCAACGGTATGGATGATCGCCTACGGACTCAGTGCTGCTGGAAGCACAAGGGTGTCGAATGAAC TGGGGGCAGGACAGCCAGAGCGAGCACGAATGGCGGTACGTGTGGTGCTAGGAATGGCAGTCATAGAGGGGCTAGTGGTGGGAGTGATCTTGTTCTCGAT ACGCAACGTTTGGGGCTACGCTTATAGCAACGACCAGCCCGTGATCGATTATGTAGCTCAAATGCTTCCCATCGTTGCCATAGCCAACTTCCTGGACGCC CTCCAGTGCGTTCTTTCGGGGACTGCTAGAGGATGTGGGTGGCAAGAGATTGGAGCATACATAAATCTTGGGTCTTACTACATAGTGGGAATTCCTTGTG GGATTTTGCTGGCATTTGTTCTTCACATTGGTGGAAAGGGTTTGTATTTGGGGATCATATGTGCTCTGGTGGTGCAAACGATCTCGCTTTCGATCCTTAT AGTTCGTACTAATTGGGCACATGAAGCAAAGAAGGCTGGCGATAGGGTCCAAGAGACAATGCCCATAGAGAGATTGTCGTGA
AA sequence Show only first row Show all	>Lus10041994 pacid=23153835 polypeptide=Lus10041994 locus=Lus10041994.g ID=Lus10041994.BGIv1.0 annot-version=v1.0 MAGGSGATSAAADESEQRVPLINGTAAAEEEERLISEGVMEEVKRQVWLAGPMIAVSLLQYSLNLISVMFVGHLGELSLSSASMATSFASVTGFSLLLGM ASALDTFCGQAYGARQYHAMSIHMQRAMLVLLVISIPLSVIWANTAHILIAVGQQQDIAEGAGTYATFMIPSIFAYAILQCQVKFLQTQSIVFPMVLCSA AAALLHLLLCWLLVFNSAMGARGAAVSNSISNWVNVVLLSLYIKFSPSCAKTWTGFSKEALVGVWAFLKLAIPSAFMVCLEMWSFEMLVLASGLLPNPKL ETSVLSISLNTAATVWMIAYGLSAAGSTRVSNELGAGQPERARMAVRVVLGMAVIEGLVVGVILFSIRNVWGYAYSNDQPVIDYVAQMLPIVAIANFLDA LQCVLSGTARGCGWQEIGAYINLGSYYIVGIPCGILLAFVLHIGGKGLYLGIICALVVQTISLSILIVRTNWAHEAKKAGDRVQETMPIERLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10041994 [exp]	0	1
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10019833 [exp]	7.1	0.9766
AT4G35180		LHT7	LYS/HIS transporter 7 (.1)		Lus10022642 [exp]	14.1	0.9743
AT3G02840			ARM repeat superfamily protein...		Lus10040125 [exp]	14.8	0.9754
AT1G35210			unknown protein		Lus10010343 [exp]	16.6	0.9749
AT2G46620			P-loop containing nucleoside t...		Lus10022362 [exp]	19.9	0.9743
					Lus10041163 [exp]	21.1	0.9736
					Lus10000859 [exp]	24.7	0.9720
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10013048 [exp]	25.9	0.9694
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Lus10008742 [exp]	26.8	0.9704
AT5G42830			HXXXD-type acyl-transferase fa...		Lus10024809 [exp]	27.6	0.9732

Compare expression of checked genes

Lus10041994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.