Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18060 243 / 3e-81 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017999 [exp] 423 / 1e-151 AT1G18060 271 / 3e-92 unknown protein Lus10012667 [exp] 250 / 2e-83 AT1G18060 204 / 7e-66 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G052300 [exp] 265 / 4e-89 AT1G18060 295 / 1e-101 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10041995 pacid=23153633 polypeptide=Lus10041995 locus=Lus10041995.g ID=Lus10041995.BGIv1.0 annot-version=v1.0 ATGGCCGTATCTCTCCCATCGGTCGCCGCCGTCACTTCACGGCAAGTATCCGTTGCCACCATCTATCATCCTCTTGCCCCTCAACCGCTCCCATCCAGCC TCAAATTCCCCGCCATTTCCGCTCCTCGCCGCCATTTTCTCGCGGTGAAGAAGAGAGCTACTCTGGACGAGAAGGACCCGATCGTAGCTGAAGAAGAAGA AGAAGAGCTTCAATCCTCCGAATCCAACGACCGAGTTGCCGAGAAGGTGAAACTGCTGAAGGAAGCTGCAAAGACGAAGAAAGTCGCAGCGGGGGAGATT TTGGAAGCTTTAGCAGTGATCGAAAAGTCCAAGATTGATCCTTCTGGTTTCCTTCAAACTCTCGGTGGTGATCAATCCCCCGGCCGCACTTGGATGCTCG TCTTCACCGCTGAGAAGCAATACAAGAGTGGCAAGTATTTCCCCATTACTGCAGTCCAGAGGTTTGATGCTGCTGGCGAGAGGATCGAGAACGGAGTGTA TCTCGGGCCACTCGGATGGCTCACATTCGAAGGGAAGCTCGCGTGGACCAAGAAGAGGGTATTGGCATTCATCTTCGAGCGAGTACGCATCAAGATCGGA CCGTTTAACCCTCTCGAGATCGGACTCGGGCAGGAAGGAGATAGGGAACCCACCATCAAGACCGATCCTTTCTTCGTCTGGTTTTATATCGACGAGGAGA TTGCTGTTGCTAGAGGTAGGAGTGGCGGCACTGCTTTCTGGTGCAGGTGCCGCCGTGTTCCTTCCTGA
AA sequence Show only first row Show all	>Lus10041995 pacid=23153633 polypeptide=Lus10041995 locus=Lus10041995.g ID=Lus10041995.BGIv1.0 annot-version=v1.0 MAVSLPSVAAVTSRQVSVATIYHPLAPQPLPSSLKFPAISAPRRHFLAVKKRATLDEKDPIVAEEEEEELQSSESNDRVAEKVKLLKEAAKTKKVAAGEI LEALAVIEKSKIDPSGFLQTLGGDQSPGRTWMLVFTAEKQYKSGKYFPITAVQRFDAAGERIENGVYLGPLGWLTFEGKLAWTKKRVLAFIFERVRIKIG PFNPLEIGLGQEGDREPTIKTDPFFVWFYIDEEIAVARGRSGGTAFWCRCRRVPS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18060			unknown protein		Lus10041995 [exp]	0	1
AT1G20340		PETE2, DRT112	PLASTOCYANIN 2, DNA-DAMAGE-REP...		Lus10034554 [exp]	1.0	0.9369
AT2G34620			Mitochondrial transcription te...		Lus10032120 [exp]	3.2	0.9206
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	4.5	0.8910
AT1G74470			Pyridine nucleotide-disulphide...		Lus10021665 [exp]	6.7	0.9129
AT1G67740		YCF32, PSBY	photosystem II BY (.1)		Lus10006243 [exp]	7.7	0.9021
AT2G47450		CPSRP43, CAO	CHLOROPLAST SIGNAL RECOGNITION...		Lus10023973 [exp]	7.9	0.8938
AT1G29930		LHCB1.3, CAB140...	LIGHT-HARVESTING CHLOROPHYLL A...		Lus10023322 [exp]	11.5	0.8909
AT1G17100			SOUL heme-binding family prote...		Lus10012559 [exp]	12.0	0.8951
AT3G44900		ATCHX4	cation/H+ exchanger 4, cation/...		Lus10043128 [exp]	12.2	0.8101
AT5G24930	CO	COL4, ATCOL4	CONSTANS-like 4 (.1)		Lus10042431 [exp]	12.3	0.8935

Compare expression of checked genes

Lus10041995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.