Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18165 343 / 3e-120 MOS4 modifier of snc1,4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018001 [exp] 480 / 2e-174 AT3G18165 365 / 6e-129 modifier of snc1,4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041800 [exp] 405 / 6e-145 AT3G18165 344 / 1e-120 modifier of snc1,4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05700 [flax] [poplar] BCAS2 Breast carcinoma amplified sequence 2 (BCAS2)
Representative CDS sequence Show only first row Show all	>Lus10041997 pacid=23153976 polypeptide=Lus10041997 locus=Lus10041997.g ID=Lus10041997.BGIv1.0 annot-version=v1.0 ATGGCTCAGAGCAGCGGCGATGTCCTGATGCTGGATGCCGCGCCGGAGTCCTCTCGCCCTTGGTCGAGCTCATCCACTGCAGAAATCATTGACGCCTTGC CGTACATCGACGACGACTACGGAAACCCTTCCATCAAGGCCGAGGTGGACCGCCTAGTCGAGGAAGAGATGCGGTGGAGCTCCAAGAAACCGGCGGACTT CCTGAAGGACTTGCCTCCCTTGCCTAAGTTCAGCTTCGAGGACTATCCAATGCTTGCGAAAGAATATGAACGTGTGAGAGCTGGGAAGCCTCCGGTTGCC CTTGATTTCTCGAGATATGCACATTTGGATCAGCCTTCTGCAAATAAGGTAAATGATGAGACTGCTTGGAAGCAGTCACTTCAGAGAGCACAACGTTTGC TTCAGCATCAAGTTTTAAGGATGGAGAATTTGGATTTGATGTCGAAATATGGCCCTGAAGTATGGAAACAGAACAACCGACAGTTGGAAGCAATGTTATC GAGGTTGCAGAAATTGGCCCAGGAACAAAATGAAAGGATTGAAGCTGTAAACCGCGAGAGGAAATACCATCAGCAAAATACTGCTTATGAGCTGAATGCT CTGTCTACTCAGTGGAGAGAGCTGAGCTTGAAAAACATTGAAATTCAAGTAGCATGTGCTGGTATTCAGGGACAGATAGATGAGCTAAAGGGAGAAGCTG CGGCGAAGGGATGGAACTTGGACGCTACTTTAGAGAACGGTTCTCAGTTGCACTGA
AA sequence Show only first row Show all	>Lus10041997 pacid=23153976 polypeptide=Lus10041997 locus=Lus10041997.g ID=Lus10041997.BGIv1.0 annot-version=v1.0 MAQSSGDVLMLDAAPESSRPWSSSSTAEIIDALPYIDDDYGNPSIKAEVDRLVEEEMRWSSKKPADFLKDLPPLPKFSFEDYPMLAKEYERVRAGKPPVA LDFSRYAHLDQPSANKVNDETAWKQSLQRAQRLLQHQVLRMENLDLMSKYGPEVWKQNNRQLEAMLSRLQKLAQEQNERIEAVNRERKYHQQNTAYELNA LSTQWRELSLKNIEIQVACAGIQGQIDELKGEAAAKGWNLDATLENGSQLH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	0	1
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	1.0	0.9441
AT4G00525			unknown protein		Lus10030386 [exp]	2.0	0.8580
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	4.2	0.8489
AT5G56130		THO3, AtTEX1	Transducin/WD40 repeat-like su...		Lus10008356 [exp]	5.3	0.8285
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10042859 [exp]	6.7	0.8190
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	6.9	0.8282
AT1G08390			unknown protein		Lus10038152 [exp]	7.3	0.8003
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028161 [exp]	7.3	0.8318
AT4G01260	GeBP		DNA-binding storekeeper protei...		Lus10004772 [exp]	7.4	0.8182
AT1G16560			Per1-like family protein (.1.2...		Lus10031765 [exp]	10.0	0.8337

Compare expression of checked genes

Lus10041997 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.