Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48635 393 / 4e-136 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 370 / 2e-127 PEX3-1 peroxin 3-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009676 [exp] 523 / 0 AT1G48635 404 / 2e-140 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009038 [exp] 481 / 3e-164 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10018002 [exp] 324 / 6e-111 AT1G48635 201 / 2e-63 PEROXIN 3-2, peroxin 3 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041700 [exp] 418 / 6e-146 AT1G48635 439 / 1e-154 PEROXIN 3-2, peroxin 3 (.1.2) Potri.012G049700 [exp] 410 / 6e-143 AT1G48635 441 / 5e-155 PEROXIN 3-2, peroxin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [flax] [poplar] Peroxin-3 Peroxin-3
Representative CDS sequence Show only first row Show all	>Lus10041998 pacid=23153586 polypeptide=Lus10041998 locus=Lus10041998.g ID=Lus10041998.BGIv1.0 annot-version=v1.0 ATGGGAGTATGCTTCTTCAATCGTGTACTTCAGTACTTCTCGTCTTTCAGATTTCTTGCTTGGGACTTTTGGAGAAGGCATAAGAAAAAGATTCTTGTAA CAGCTGGTGTTGTGGGAAGTGGTTATTGCTTGTATAAGGTGTATAATGCACACAAGAACCAGCTCGCTGATCTGGAAAGACAACTTGCTGATGAACGAGA GAACGATGAACTCATTAAAACCCAGATGCAGGCTCATTTCGAGAATATACAGGTGATAGCTGATACGGTAACATTGCCACATTCAGTTACCTATTTGAAT ATTCGGATAACAGAAGAATTAGACCATTCGTATATCACAGAGGCCCTGCAGAAAGGGAAGGGTCAGCCTGCTGCTCTTACAACAGCAGAGAAACTCGAGC TTTGGGACAAGCTGAAGATCATAAGTTTCACAAGAATGTTGGTCTCTCTCTGGGCAGTAACCTTGCTTAGCTTGTACAGTAGAGTTCAAGTGAATATTCT CGGACGACATCTATATATTGAAATATCGCGTGGTCTGGGGAACTCTTTCATGTTGGAGGATGCCGATCTCATTGACAGAGATGACCAGCAAAAATTTTTG GCTGCCGCGGCTTATCTTCCACATTCTGGCTTGCTTGTGTTGGCAGCTGATATTCAAGCAGCAGTGACAGAAGCTTTAAAGGCGAAACAATTGAAAGATT TGCTAGACGCAACTGCACTTCGTGAAACAGTAATGCAGATAACCGATATATTCATAGGCATGGGAAGTCCCGGGAGGTGGGTGGACTACTTGATGCCGGT GGAGACTACGTTACACAAAGAGGCAATGGTCGTTACAAAATTCGATCAGCTCATGCTCGAGACGCGAGAAGTTATATTGAGCCCCGAGTTCGGAAGAGTT GTGGAGGTCTCTCTGAAGCAACTGATCGATTCCCTTGTGGAAGACTTGGAAACACAGTCCGGAGAGGGCAGTCTAGCGACAGCTCTGCCTCTGGCGAAAC TTTTGCCTCGAGTAGCCCAGGTGGCTTCATTGATACTCGCAGAACCAAGTGAGAATCGTTACATCCGAATCATCAGAGCATCCTCAGAGGTTGAGCTCTT CTTCACTCTCTTGTACGCCAATGCACCACCGGAGGAGTCGTAG
AA sequence Show only first row Show all	>Lus10041998 pacid=23153586 polypeptide=Lus10041998 locus=Lus10041998.g ID=Lus10041998.BGIv1.0 annot-version=v1.0 MGVCFFNRVLQYFSSFRFLAWDFWRRHKKKILVTAGVVGSGYCLYKVYNAHKNQLADLERQLADERENDELIKTQMQAHFENIQVIADTVTLPHSVTYLN IRITEELDHSYITEALQKGKGQPAALTTAEKLELWDKLKIISFTRMLVSLWAVTLLSLYSRVQVNILGRHLYIEISRGLGNSFMLEDADLIDRDDQQKFL AAAAYLPHSGLLVLAADIQAAVTEALKAKQLKDLLDATALRETVMQITDIFIGMGSPGRWVDYLMPVETTLHKEAMVVTKFDQLMLETREVILSPEFGRV VEVSLKQLIDSLVEDLETQSGEGSLATALPLAKLLPRVAQVASLILAEPSENRYIRIIRASSEVELFFTLLYANAPPEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10041998 [exp]	0	1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Lus10026913 [exp]	6.7	0.9104
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Lus10003567 [exp]	9.8	0.9085
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10008285 [exp]	10.0	0.9065
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	10.2	0.8932
AT5G58003		CPL4	C-terminal domain phosphatase-...		Lus10036689 [exp]	11.7	0.8894
AT4G35580	NAC	NTL9, CBNAC	NAC transcription factor-like ...		Lus10033251 [exp]	15.0	0.9003
AT5G02520			unknown protein		Lus10025814 [exp]	16.2	0.8884
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Lus10021784 [exp]	18.0	0.8996
AT1G05410			Protein of unknown function (D...		Lus10010550 [exp]	18.0	0.8904
AT5G28850			Calcium-binding EF-hand family...		Lus10021174 [exp]	19.1	0.9020

Compare expression of checked genes

Lus10041998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.