Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09590 866 / 0 HSC70-5, mtHSC70-2 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) AT4G37910 818 / 0 MTHSC70-1 mitochondrial heat shock protein 70-1 (.1) AT4G24280 572 / 0 CPHSC70-1 chloroplast heat shock protein 70-1 (.1) AT5G49910 567 / 0 CPHSC70-2EATSHOCKPROTEIN70-2, HSC70-7, cpHSC70-2 ,CPHSC70-2EAT SHOCK PROTEIN 70-2 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) AT5G28540 478 / 5e-163 BIP1 heat shock protein 70 (Hsp 70) family protein (.1) AT5G42020 477 / 1e-162 BIP2, BIP luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT5G02500 471 / 7e-161 AtHsp70-1, AT-HSC70-1, HSP70-1, HSC70-1 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) AT5G02490 467 / 3e-159 AtHsp70-2 Heat shock protein 70 (Hsp 70) family protein (.1) AT3G09440 466 / 1e-158 Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) AT3G12580 461 / 7e-157 ATHSP70, HSP70 ARABIDOPSIS HEAT SHOCK PROTEIN 70, heat shock protein 70 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041999 [exp] 969 / 0 AT5G09590 1138 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10018003 [exp] 966 / 0 AT5G09590 1065 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009039 [exp] 940 / 0 AT5G09590 1147 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10009677 [exp] 939 / 0 AT5G09590 1152 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Lus10035781 [exp] 568 / 0 AT5G49910 1187 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10037357 [exp] 568 / 0 AT5G49910 1191 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10039044 [exp] 564 / 0 AT5G49910 1164 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1) Lus10027341 [exp] 561 / 0 AT4G24280 1003 / 0.0 chloroplast heat shock protein 70-1 (.1) Lus10017566 [exp] 552 / 0 AT5G49910 1152 / 0.0 HEAT SHOCK PROTEIN 70-7, chloroplast heat shock protein 70-2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079700 [exp] 896 / 0 AT5G09590 1153 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.001G285500 [exp] 884 / 0 AT5G09590 934 / 0.0 HEAT SHOCK COGNATE, mitochondrial HSO70 2 (.1) Potri.003G006300 [exp] 559 / 0 AT4G24280 1110 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.004G224400 [exp] 558 / 0 AT4G24280 1108 / 0.0 chloroplast heat shock protein 70-1 (.1) Potri.003G143600 [exp] 481 / 2e-164 AT5G42020 1205 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.001G087500 [exp] 481 / 3e-164 AT5G42020 1184 / 0.0 luminal binding protein, Heat shock protein 70 (Hsp 70) family protein (.1), Heat shock protein 70 (Hsp 70) family protein (.2) Potri.012G017600 [exp] 470 / 4e-160 AT5G28540 1093 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.013G018000 [exp] 469 / 1e-159 AT5G28540 991 / 0.0 heat shock protein 70 (Hsp 70) family protein (.1) Potri.008G054700 [exp] 460 / 9e-158 AT5G02500 920 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2) Potri.010G205700 [exp] 462 / 3e-157 AT5G02500 1119 / 0.0 HEAT SHOCK PROTEIN 70-1, ARABIDOPSIS THALIANA HEAT SHOCK COGNATE PROTEIN 70-1, heat shock cognate protein 70-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0108 [flax] [poplar] Actin_ATPase PF00012 [flax] [poplar] HSP70 Hsp70 protein
Representative CDS sequence Show only first row Show all	>Lus10042000 pacid=23153983 polypeptide=Lus10042000 locus=Lus10042000.g ID=Lus10042000.BGIv1.0 annot-version=v1.0 ATGGGTTGGGTGTCAGAGACAGCCGAGGCTTACCTACAGAAGACGGTTTCAAAAGCTGTAATCACTGTGCCAGCATATTTCAATGATGCCCAAAGGCAGG CCACAAAGGATGCTGGCAAAATTGCTGGCCTCGATGTCCAGAGGATCATCAACGAGCCTACTGCTGCTGCGCTTTCTTATGGCATGAACAATAAGGAAGG GCTTATTGCTGTGTTTGACCTTGGAGGTGGTACCTTTGATGTTTCCATTCTTGAGATATCTAACGGTGTCTTTGAGGTCAAAGCTACCAATGGTGACACT TTCCTAGGAGGAGAGGATTTCGATAATGCTCTACTGGACTTCCTGGTTAGTGAATTCAGAAGGACAGAAAACATCGACCTTACCAAGGACAAGCTCGCCC TTCAGAGGCTCCGCGAGGCAGCAGAGAAGGCCAAGATTGAGCTCTCATCCACGAGTCAGACCGACATAAACTTGCCATTTATTACGGCCGATGCTTCCGG TGCAAAACATCTCAACATTACACTGACTCGGTCAAAGTTTGAGAGCTTGGTTAACAACTTGATTGAGAGGACCAAGGAGCCTTGCAAAAACTGCCTGAAG GATGCAGGTATTTCAACCAAGGAAGTCGATGAGGTGCTACTTGTAGGAGGCATGACCCGTGTACCTAAGGTTCAGGAAGTCGTTTCCAATATCTTTGGCA AGAGTCCTAGTAAAGGTGTGAACCCCGACGAGGCAGTTGCCATGGGAGCTGCCCTTCAAGGCGGTATTCTCCGGGGTGATGTGAAGGAGTTGCTTCTCTT GGATGTCACGCCTTTGTCGCTTGGTATCGAAACATTGGGTGGGATCTTCACTCGATTGATTAGCAGGAACACCACCATTCCAACCAAGAAGAGTCAGGTG TTTTCGACTGCTGCCGATAACCAGACTCAAGTCGGCATCAAAGTTCTCCAGGGCGAGCGCGAGATGGCATCCGACAACAAGATGTTAGGAGAGTTCGACT TAGTCGGTATACCGCCAGCACCAAGGGGGATGCCACAGATCGAAGTGGCGTTCGATATCGATGCCAACGGTATTGTGACAGTGTCCGCAAAGGATAAGGC CACTGGAAAGGAGCAACATGTCACCATCAAATCATCCGGTGGCTTGTCAGAGGACGAGATCGAGAAGATGGTCAGGGAAGCCGAGCAGTTTTCCCAGAAG GATCAAGAGCGAAAGGCCCTGATCGATGTCCGAAATACTGCCGACACCACTATATACAGCATCGAGAAGAGCCTGAATGAATACAGGGACAAGATCCCCT CCGAAGTCGCCAAGGAGATTGAGGACGCCATCTCCGATTTGAGGACATCGATGTCGGCAGACAACGTGGATGAGATCAAGGCCAAGATTGACGCAGCAAA CAAAGCTGTGTCTAAGATCGGCGAGCACATGTCCAAGGGGTCAAGTGGAGGCGACAGCGGTAGCTCTGACGGAGGTGCCTCGCAAGCCGGTGGCGAGCAG GCTCCTGAGGCTGAGTACGAGGAGGTGAAGAAGTGA
AA sequence Show only first row Show all	>Lus10042000 pacid=23153983 polypeptide=Lus10042000 locus=Lus10042000.g ID=Lus10042000.BGIv1.0 annot-version=v1.0 MGWVSETAEAYLQKTVSKAVITVPAYFNDAQRQATKDAGKIAGLDVQRIINEPTAAALSYGMNNKEGLIAVFDLGGGTFDVSILEISNGVFEVKATNGDT FLGGEDFDNALLDFLVSEFRRTENIDLTKDKLALQRLREAAEKAKIELSSTSQTDINLPFITADASGAKHLNITLTRSKFESLVNNLIERTKEPCKNCLK DAGISTKEVDEVLLVGGMTRVPKVQEVVSNIFGKSPSKGVNPDEAVAMGAALQGGILRGDVKELLLLDVTPLSLGIETLGGIFTRLISRNTTIPTKKSQV FSTAADNQTQVGIKVLQGEREMASDNKMLGEFDLVGIPPAPRGMPQIEVAFDIDANGIVTVSAKDKATGKEQHVTIKSSGGLSEDEIEKMVREAEQFSQK DQERKALIDVRNTADTTIYSIEKSLNEYRDKIPSEVAKEIEDAISDLRTSMSADNVDEIKAKIDAANKAVSKIGEHMSKGSSGGDSGSSDGGASQAGGEQ APEAEYEEVKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10042000 [exp]	0	1
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10018003 [exp]	1.0	0.9909
AT5G09590		HSC70-5, mtHSC7...	HEAT SHOCK COGNATE, mitochondr...		Lus10041999 [exp]	1.4	0.9894
AT4G35890			winged-helix DNA-binding trans...		Lus10014254 [exp]	3.6	0.9571
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	4.2	0.9682
AT4G02930			GTP binding Elongation factor ...		Lus10027995 [exp]	4.9	0.9673
AT5G10360		RPS6B, EMB3010	Ribosomal protein small subuni...		Lus10035414 [exp]	5.9	0.9647
AT2G41840			Ribosomal protein S5 family pr...		Lus10030130 [exp]	6.5	0.9644
AT2G28600			P-loop containing nucleoside t...		Lus10043421 [exp]	6.9	0.9646
AT2G01720			Ribophorin I (.1)		Lus10040410 [exp]	6.9	0.9626
AT1G03860		ATPHB2	prohibitin 2 (.1.2.3)		Lus10034395 [exp]	7.1	0.9548

Compare expression of checked genes

Lus10042000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.