Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17970 695 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 533 / 0 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 351 / 9e-116 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 98 / 2e-21 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 86 / 2e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 82 / 8e-17 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G08320 78 / 4e-15 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT3G25660 75 / 4e-14 Amidase family protein (.1) AT1G62740 75 / 5e-14 Hop2 Hop2, stress-inducible protein, putative (.1) AT1G12270 75 / 8e-14 Hop1 Hop1, stress-inducible protein, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018004 [exp] 1092 / 0 AT3G17970 711 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 850 / 0 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 830 / 0 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 379 / 1e-126 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 365 / 9e-121 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10031418 [exp] 93 / 6e-20 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 83 / 7e-17 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 83 / 8e-17 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10041189 [exp] 82 / 1e-16 AT1G04190 516 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038600 [exp] 787 / 0 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 776 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 534 / 0 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G024200 [exp] 415 / 8e-141 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 385 / 4e-129 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.005G014100 [exp] 100 / 4e-22 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 97 / 5e-21 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.010G082900 [exp] 81 / 3e-16 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G098600 [exp] 82 / 4e-16 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.005G070300 [exp] 81 / 6e-16 AT5G64440 488 / 1e-166 fatty acid amide hydrolase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Lus10042001 pacid=23153921 polypeptide=Lus10042001 locus=Lus10042001.g ID=Lus10042001.BGIv1.0 annot-version=v1.0 ATGATGGTGTCCTCTCCATCTGTACCTGCCAATCTATGGGTGCTCCTCGGGCTGAGCCTCGCCGGGATCTTCCTACTCACCAGAAGGTTGAAGAAAGCTG TGCGGGAAGACTTCGGTGCCTTTGTCCAGAAGCTTCAACTCCTCCCCCCGCCTCAGCCAGCTCCGCCTAAAGCTCGCCATCCACTCACCGGTCTCACCTT CGCCGTCTCAGACGTATTTGACATTGAAGGATTTGTGACTGGTTGTGGACATCCTGATTGGGGAAGTACACATGGTTCAGCTACTCGGACGGCTGCTGTG ATTTCTAATCTTGTTCAAGGGGGTGCTACTTGTGTAGGCAAAACCGTGGTGGATGAACTGGCTTATAGTATCAATGGAGAAAATAAGCATTATGGTACAC CTACGAATCCTGCAGCTCCTACTCGTGTCCCTGGTGGATCTTCTAGTGGATCAGCTGTTGCTGTAGCTGCTAAGTTTGTTGATTTTGCATTGGGTGTTGA TACGGTTGGTGGTGTACGAGTACCTGCTGCGTTTTGTGGGGTCATAGGATTCCGTCCATCATATGGAGCTCTTTCCAACATGGGAATGTTAACTGTTTCT CCAAGTTTAGATACGGTTGGATTGTTTGCGAATGATCCAGACATTCTGCGGCGTGTTGGTAACGTGCTCCTGCAACTTCCATTTGGATTTCAACGTAAAC CCCGACAAATTATAATAGCTGATGATACTTTTGAACGATTCAAGATCCCTTTCGATAGGCTTGCTCAGGCATTGATCAAATCCACCGAGAAGCTCTTTGG AAGACAAGTGTTGAAGCATGAAATTCTGGAGGATTTTCTATGTTCTAATGTTCCAAGCTTGAAAAAGATCCACAGAAAGAACGCCAATGGTGAAGTCAAA GTCAAAACTTCATCACTGCAAGTGCTAGCAAATATCATGCAGGCTCTTCATAGATATGAGTTCAATGATATTCACGAGGAGTGGTTGAAATCGGAAAAGC CTGTCCTCGATCCTATTATCTCTGTACAATTGAATGATGCAGCTGAGATTTCGGATACAGAGATTGAAACATACAGATCTGTCAGAAATGAAATGCGTGC AGCTATGAACTCTCTGCTGAAGGACGATGGAATTCTTGTTATTCCTACAACAGCTTATCTTCCTCCTAAACTCAATTCAAAAGAGATGCTCTTAGAGGAC TACAAGACTCGTTCTTTTAGCCTCCTGAGTATTGCTAGTCTCTCGGGATGTTGTCAGGTCACAATTCCAATGGGGAAGCATGACAATTGTCCTGCTTCAG TTTCTTTCATTGCCCGGCAAGGGGGTGATCGCTTACTACTAGACACGTTGCAGACCATGTTTACATCTCTACAAGAGCAGGCCAATATTCTCTCTACATC CAATAGATCTAGCCATGCCAAAAACCCTGAAATATCTGCAGATGAAGCTAAGGAGAAGGGTAACCAAGCATTCAAAGAGAAGCAATGGCAAAAGGCTATT GGGTTTTACACAGAAGCAATTAAACTTAATGACAGTAACGCAACTTATTATAGCAACAGAGCTGCAGCTTATCTTGAAATTCTTAGCTTTCATAAAGCCG AAGCTGATTGTTCGAAAGCTATTGACCTGGATAAAAAGAATGTGAAGGCCTATTTGAGACGAGGCACGGCAAGGGAGATGCTTGGTTATTATAAGGAGGC CATTGAAGATTTCGGATACGCCTTGGTGCTCGAACCAACGAATAAGCGAGCGGCAGCTTCTGCAGAAAGGCTGAGAAAGGTGTTCCGATAA
AA sequence Show only first row Show all	>Lus10042001 pacid=23153921 polypeptide=Lus10042001 locus=Lus10042001.g ID=Lus10042001.BGIv1.0 annot-version=v1.0 MMVSSPSVPANLWVLLGLSLAGIFLLTRRLKKAVREDFGAFVQKLQLLPPPQPAPPKARHPLTGLTFAVSDVFDIEGFVTGCGHPDWGSTHGSATRTAAV ISNLVQGGATCVGKTVVDELAYSINGENKHYGTPTNPAAPTRVPGGSSSGSAVAVAAKFVDFALGVDTVGGVRVPAAFCGVIGFRPSYGALSNMGMLTVS PSLDTVGLFANDPDILRRVGNVLLQLPFGFQRKPRQIIIADDTFERFKIPFDRLAQALIKSTEKLFGRQVLKHEILEDFLCSNVPSLKKIHRKNANGEVK VKTSSLQVLANIMQALHRYEFNDIHEEWLKSEKPVLDPIISVQLNDAAEISDTEIETYRSVRNEMRAAMNSLLKDDGILVIPTTAYLPPKLNSKEMLLED YKTRSFSLLSIASLSGCCQVTIPMGKHDNCPASVSFIARQGGDRLLLDTLQTMFTSLQEQANILSTSNRSSHAKNPEISADEAKEKGNQAFKEKQWQKAI GFYTEAIKLNDSNATYYSNRAAAYLEILSFHKAEADCSKAIDLDKKNVKAYLRRGTAREMLGYYKEAIEDFGYALVLEPTNKRAAASAERLRKVFR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10042001 [exp]	0	1
AT1G06330			Heavy metal transport/detoxifi...		Lus10020704 [exp]	4.0	0.9103
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Lus10003444 [exp]	8.4	0.9056
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10038109 [exp]	12.4	0.8705
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Lus10008038 [exp]	22.4	0.8724
AT2G45570		CYP76C2	"cytochrome P450, family 76, s...		Lus10027426 [exp]	26.2	0.8907
AT2G44660			ALG6, ALG8 glycosyltransferase...		Lus10019495 [exp]	30.0	0.8754
AT4G00080		UNE11	unfertilized embryo sac 11, Pl...		Lus10030292 [exp]	32.2	0.8887
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032254 [exp]	33.2	0.8893
AT5G06580			FAD-linked oxidases family pro...		Lus10015987 [exp]	33.5	0.8706
AT5G03730		AtCTR1, SIS1, C...	SUGAR-INSENSITIVE 1, CONSTITUT...		Lus10014368 [exp]	35.5	0.8708

Compare expression of checked genes

Lus10042001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.