Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57090 160 / 1e-46 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 158 / 4e-46 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G77110 137 / 3e-38 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G16530 110 / 1e-29 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 94 / 4e-23 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT1G73590 0 / 1 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G70940 0 / 1 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G23080 0 / 1 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018006 [exp] 189 / 7e-62 AT1G73590 353 / 5e-120 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 182 / 5e-55 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10012680 [exp] 164 / 1e-51 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10001637 [exp] 155 / 1e-44 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 119 / 6e-33 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 119 / 1e-32 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 107 / 5e-28 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 104 / 5e-27 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10001429 [exp] 0 / 1 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047200 [exp] 168 / 9e-50 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 166 / 7e-49 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 162 / 1e-47 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 160 / 1e-46 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 159 / 4e-46 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 155 / 8e-45 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 139 / 4e-39 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 134 / 9e-38 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) Potri.001G205200 [exp] 134 / 1e-37 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 127 / 8e-35 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10042003 pacid=23153800 polypeptide=Lus10042003 locus=Lus10042003.g ID=Lus10042003.BGIv1.0 annot-version=v1.0 ATGATCACCGGCACAGACTTCTACCACGTAATGACGGCGATGGTTCCACTCTACGTCGCCATGTTTCTCGCCTACGGCTCCGTCAAATGGTGGAAAATCT TCACCCCCGACCAATGCTCTGGAATCAACCGATTCGTCGCTCTTTTCGCTGTCCCTCTCCTTTCTTTCCATTTCATCTCCTCCAACAACCCTTACACCAT GAACTTCCACTTCATCGCCGCCGACTCTCTCCAAAAACTCATCATCCTAGTCGCTTTAGCCTTCTGGTCGAATCTCACCCGCGAATCTCACCCGCCGCGG CTCTCTAGACTGGACGATCACTCTCTTCTCCCTGTCGACTCTCCCCAACACACTGGTGATGGGGATTCCTCTCCTGAAAGGAATGTACGGCGACGAATCA GGAACCCTAATGGTCCAGATCGTCGTCTTACAGTGTATCATCTGGTACACTCTGATGCTGTTCATGTTCGAGTTCCGTGGAGCTAG
AA sequence Show only first row Show all	>Lus10042003 pacid=23153800 polypeptide=Lus10042003 locus=Lus10042003.g ID=Lus10042003.BGIv1.0 annot-version=v1.0 MITGTDFYHVMTAMVPLYVAMFLAYGSVKWWKIFTPDQCSGINRFVALFAVPLLSFHFISSNNPYTMNFHFIAADSLQKLIILVALAFWSNLTRESHPPR LSRLDDHSLLPVDSPQHTGDGDSSPERNVRRRIRNPNGPDRRLTVYHLVHSDAVHVRVPWS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	1.0	0.9425
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	3.0	0.8491
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	4.1	0.8109
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	4.5	0.8443
AT5G48520		AtAUG3	augmin 3, unknown protein		Lus10038231 [exp]	4.9	0.8512
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Lus10021711 [exp]	5.1	0.8196
AT3G12150			unknown protein		Lus10027799 [exp]	5.3	0.7951
AT4G38050			Xanthine/uracil permease famil...		Lus10035946 [exp]	8.5	0.8247
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	11.3	0.8328
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	19.0	0.7776

Compare expression of checked genes

Lus10042003 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.