Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 464 / 5e-160 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT2G01420 393 / 3e-132 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G23080 380 / 5e-127 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G70940 374 / 2e-124 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT5G57090 362 / 1e-119 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G77110 227 / 2e-68 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 187 / 3e-55 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 171 / 3e-49 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009054 [exp] 530 / 0 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009686 [exp] 289 / 1e-97 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10018007 [exp] 287 / 5e-97 AT5G57090 276 / 2e-90 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020830 [exp] 275 / 2e-92 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10001429 [exp] 262 / 4e-81 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 262 / 5e-81 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10009685 [exp] 219 / 2e-67 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 196 / 5e-59 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 193 / 8e-58 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038700 [exp] 541 / 0 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 541 / 0 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 420 / 2e-142 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 416 / 7e-141 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 413 / 2e-140 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 408 / 2e-138 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 380 / 5e-127 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 223 / 2e-67 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 221 / 1e-66 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 219 / 1e-65 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10042004 pacid=23153829 polypeptide=Lus10042004 locus=Lus10042004.g ID=Lus10042004.BGIv1.0 annot-version=v1.0 ATGTCGCTCGACGGACGGCAGCCGCTTGAAACGGAGGCGGAGATTAAGGAGGACGGGAAACTTCATGTCACTGTACGGAGGTCGAATGCTTCCAGATCTG ATATCTTCTCCAGAGGTGGGCTCTCGTCGGCAACTCCTCGGCCGTCGAATCTCACTAACGCGGAGATCTACTCATTGCAGTCGTCCAGGAATCCGACTCC GAGAGGGTCGAGCTTCAACCACACTGATTTTTACTCGATGATGGCTGCCGGCGGTGGTGGTCGGGGATCCAACTTCGGGCAGAACGATTTGAGCTCGCGT GGACCGACTCCGAGGGGGTCGAACTATGATGAGGAGAGTAAGGGGAGGTTCCATCATTACCCGGCTCCGAACCCCGGGATGTTCTCTCCGACGACCGGAG CTGTAGGAGGAGGAGCAGCCAAGGGTGCTGTTGCTACCAGCGGCAAGAAAGGCGGCGGAGATGGAAAGGATCTCCACATGTTTGTATGGAGCTCAACGGC GTCGCCGGTTTCGGATGTATTCGGGAGCCACGAGTACGGCGGTGGGCATCATAAGGAAGTCCGTCTGGCTGTTTCTCCCGGCAAAGTTGAGCAGCAGAGG GAGCATCAAGGAGAAGACTACTTAGTCGAGAGGGAAGAGTTCAGTTTCGGAAACGAGAACGGCGCCGCCGGAGAGAAGGCTGCTGCGGCGGCGGCCGGCG GAGGAGGTGACGTGAAGTCGAAAGTGATGCCGCCGACCAGCGTAATGACGAGACTGATTCTCATTATGGTGTGGAGGAAGCTGATTAGGAACCCCAACAC GTATTCCAGCTTGATTGGTCTCGTTTGGTCACTAGTCTCCTTCAGGTGGCATGTTGAAATGCCGGCGATCATAGCAAAATCGATCTCCATTCTCTCCGAT GCAGGGCTTGGCATGGCCATGTTCAGTCTTGGGTTGTTCATGGCATTGCAGCCGAAGATCATAGCATGTGGGAAGTCCACAGCAGCATTTGCAGCTGGAG TTCGGTTCTTCGTCGGTCCAGCTGTCATGGCTGCTGCTTCCATTGTCGTCGGTCTCAAAGGCACCCTCCTCCACATCGCCATCGTCCAGGCAGCGCTGCC ACAGGGTATTGTTCCCTTTGTCTTTGCAAAGGAGTACAACCTGCATCCTGATATTCTCAGCACAGCGGTGATATTTGGGATGCTTATTGCTTTACCCTTT ACCCTAGTGTACTACATTCTGCTAGGACTATGA
AA sequence Show only first row Show all	>Lus10042004 pacid=23153829 polypeptide=Lus10042004 locus=Lus10042004.g ID=Lus10042004.BGIv1.0 annot-version=v1.0 MSLDGRQPLETEAEIKEDGKLHVTVRRSNASRSDIFSRGGLSSATPRPSNLTNAEIYSLQSSRNPTPRGSSFNHTDFYSMMAAGGGGRGSNFGQNDLSSR GPTPRGSNYDEESKGRFHHYPAPNPGMFSPTTGAVGGGAAKGAVATSGKKGGGDGKDLHMFVWSSTASPVSDVFGSHEYGGGHHKEVRLAVSPGKVEQQR EHQGEDYLVEREEFSFGNENGAAGEKAAAAAAGGGGDVKSKVMPPTSVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWHVEMPAIIAKSISILSD AGLGMAMFSLGLFMALQPKIIACGKSTAAFAAGVRFFVGPAVMAAASIVVGLKGTLLHIAIVQAALPQGIVPFVFAKEYNLHPDILSTAVIFGMLIALPF TLVYYILLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	1.0	0.9425
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	3.5	0.8429
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	4.2	0.8369
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	6.9	0.8199
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	8.9	0.8276
AT4G24830			arginosuccinate synthase famil...		Lus10013207 [exp]	10.0	0.8219
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	13.6	0.7781
AT1G14185			Glucose-methanol-choline (GMC)...		Lus10030456 [exp]	16.5	0.7617
AT3G12150			unknown protein		Lus10027799 [exp]	16.9	0.7729
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	18.4	0.7333

Compare expression of checked genes

Lus10042004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.