Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77920 402 / 6e-140 bZIP bZIP transcription factor family protein (.1) AT5G65210 392 / 6e-136 bZIP TGA1 bZIP transcription factor family protein (.1.2.3.4.5.6) AT5G10030 388 / 2e-134 bZIP OBF4, TGA4 OCS ELEMENT BINDING FACTOR 4, TGACG motif-binding factor 4 (.1.2) AT1G22070 384 / 1e-132 bZIP TGA3 TGA1A-related gene 3 (.1) AT5G06950 289 / 5e-96 bZIP TGA2, AHBP-1B bZIP transcription factor family protein (.1.2.3.4) AT1G08320 288 / 2e-95 bZIP TGA9, bZIP21 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3) AT3G12250 282 / 1e-93 bZIP BZIP45, TGA6 TGACG motif-binding factor 6 (.1.2.3.4.5) AT5G06839 283 / 1e-92 bZIP TGA10, bZIP65 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) AT5G06960 271 / 6e-89 bZIP TGA5, OBF5 TGACG MOTIF-BINDING FACTOR 5, OCS-element binding factor 5 (.1.2) AT1G68640 255 / 3e-81 bZIP PAN PERIANTHIA, bZIP transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018009 [exp] 705 / 0 AT1G77920 424 / 2e-148 bZIP transcription factor family protein (.1) Lus10009055 [exp] 561 / 0 AT1G77920 442 / 2e-155 bZIP transcription factor family protein (.1) Lus10031349 [exp] 538 / 0 AT1G77920 429 / 1e-150 bZIP transcription factor family protein (.1) Lus10035873 [exp] 346 / 1e-117 AT5G65210 456 / 3e-161 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10037550 [exp] 340 / 2e-114 AT5G65210 444 / 3e-155 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10011445 [exp] 335 / 3e-113 AT5G65210 449 / 2e-158 bZIP transcription factor family protein (.1.2.3.4.5.6) Lus10026166 [exp] 302 / 3e-101 AT3G12250 514 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10008658 [exp] 300 / 3e-100 AT3G12250 521 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5) Lus10024140 [exp] 298 / 3e-99 AT3G12250 532 / 0.0 TGACG motif-binding factor 6 (.1.2.3.4.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G170500 [exp] 487 / 1e-173 AT1G77920 468 / 5e-166 bZIP transcription factor family protein (.1) Potri.002G090700 [exp] 457 / 1e-161 AT1G77920 444 / 1e-156 bZIP transcription factor family protein (.1) Potri.007G085700 [exp] 379 / 9e-131 AT5G65210 523 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.005G082000 [exp] 357 / 3e-122 AT5G65210 506 / 0.0 bZIP transcription factor family protein (.1.2.3.4.5.6) Potri.001G029800 [exp] 300 / 2e-98 AT3G12250 423 / 4e-147 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G039000 [exp] 299 / 6e-98 AT5G06950 413 / 3e-143 bZIP transcription factor family protein (.1.2.3.4) Potri.016G036500 [exp] 298 / 7e-98 AT5G06950 410 / 2e-142 bZIP transcription factor family protein (.1.2.3.4) Potri.003G194600 [exp] 298 / 3e-97 AT3G12250 462 / 3e-162 TGACG motif-binding factor 6 (.1.2.3.4.5) Potri.006G058800 [exp] 293 / 5e-95 AT5G06839 540 / 0.0 TGACG \(TGA\) motif-binding protein 10, bZIP transcription factor family protein (.1.2.3) Potri.009G164300 [exp] 290 / 2e-94 AT1G08320 574 / 0.0 TGACG \(TGA\) motif-binding protein 9, bZIP transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0018 [flax] [poplar] bZIP PF00170 [flax] [poplar] bZIP_1 bZIP transcription factor
Representative CDS sequence Show only first row Show all	>Lus10042005 pacid=23153755 polypeptide=Lus10042005 locus=Lus10042005.g ID=Lus10042005.BGIv1.0 annot-version=v1.0 ATGATGAGCTCTCCAACAACCCAACTGGCTATCTTGAGAGGGATGGGGATCTACGAGCCATTCCAGCAGATTAGCTCATGGGCTACTACAGACCCGTTTA GAGGAGATAATCATATCCTCAATAACATTACTACAGCAGCTTCTCTAGCTGTGCCTGTTGAATCTGCAGCACCAGAAAACAAGGCTGAGAATGGCTCTCA TGAGTCAACTGAACCATACAAAAGTGATCAAGAAGCTGGTGGCAGGCCCGCTGATAAGACACAGAGGCGACTGGCTCAAAACCGAGAAGCTGCTCGAAAA AGCCGGTTGAGGAAAAAGGCTTATGTTCAGCAATTGGAATCCAGCCGTTTGAAGTTGGCTCAGCTAGAGCAGGAGCTTGTGAGAGCTAGGCAACAGGGTG TATACATCAACAACAGTCTTGATTTCGGATCGTCCAGGACTTTGAATTCAGGAATTGCTACCTTTGAGATGGAATATGCGCATTGGGTCGGGGAGCAACA CAAACAAGTAAGCGAGCTACGGAGAGCGATGCAAGCTCACGTTGGCGATGTCGAACTGAGGATGCTGCTCGAGAATGGGCTGAACCACTTCAACAACCTT TTCCTCATGAAAGCAGATGCTGCCAGGGCTGATGTTTTCTACCTCATCTCGGGGAAGTGGAGGACCTCAGTCGAACGATTCTTCCTCTGGATCGGTGGGT TCCGCCCATCAGAGCTTCTAAATGTTCTGCTGCCACAATTAGAGCCATTGACAGATCCGCAACACTCCGAAATCTGCACACTGAGACAGTCGTGTCAGCA AGCGGAGGATGCACTCTCGCAAGGAGTCGAGAAGCTCCAGCAGACGCTGTCGCAAAGCATGGCTGTTGACCAAAGCATTGCCGGTAGTTACAGGGATCAA ATGGCTGCTTCCATTGAGAGGCTGGAAGGTCTTGAAGGTTTTGCTAATCAGGCGGATCACTTGAGGAGTCAGACTCTGCACCACATGTCGAGGATCCTCA CAACGAGACAAGCTGCTCGATTTATGCTCTTGTTGGGGGAGTACTTCGAACGCCTTCATGCTCTCAGCTCGCTGTGGTCTGCTCGTCCTCGCGAACCCAC ATGA
AA sequence Show only first row Show all	>Lus10042005 pacid=23153755 polypeptide=Lus10042005 locus=Lus10042005.g ID=Lus10042005.BGIv1.0 annot-version=v1.0 MMSSPTTQLAILRGMGIYEPFQQISSWATTDPFRGDNHILNNITTAASLAVPVESAAPENKAENGSHESTEPYKSDQEAGGRPADKTQRRLAQNREAARK SRLRKKAYVQQLESSRLKLAQLEQELVRARQQGVYINNSLDFGSSRTLNSGIATFEMEYAHWVGEQHKQVSELRRAMQAHVGDVELRMLLENGLNHFNNL FLMKADAARADVFYLISGKWRTSVERFFLWIGGFRPSELLNVLLPQLEPLTDPQHSEICTLRQSCQQAEDALSQGVEKLQQTLSQSMAVDQSIAGSYRDQ MAASIERLEGLEGFANQADHLRSQTLHHMSRILTTRQAARFMLLLGEYFERLHALSSLWSARPREPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10042005 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Lus10018009 [exp]	1.4	0.9242
					Lus10020401 [exp]	2.4	0.9329
AT1G14820			Sec14p-like phosphatidylinosit...		Lus10001584 [exp]	2.8	0.8772
					Lus10009581 [exp]	3.9	0.9070
AT5G67090			Subtilisin-like serine endopep...		Lus10009748 [exp]	9.2	0.8807
AT5G20700			Protein of unknown function (D...		Lus10027595 [exp]	10.5	0.8714
AT5G20700			Protein of unknown function (D...		Lus10022948 [exp]	10.6	0.8019
AT4G21960		PRXR1	Peroxidase superfamily protein...		Lus10006778 [exp]	11.0	0.8788
AT2G25625			unknown protein		Lus10008096 [exp]	12.6	0.8480
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10003875 [exp]	12.7	0.8545

Compare expression of checked genes

Lus10042005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.