Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18000 841 / 0 XPL1, NMT1, XIPOTL1, PEAMT XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G73600 838 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G48600 829 / 0 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G64970 76 / 6e-15 VTE4, TMT1, G-TMT VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) AT5G13710 74 / 3e-14 CPH, SMT1 CEPHALOPOD, sterol methyltransferase 1 (.1.2) AT1G20330 67 / 8e-12 FRL1, CVP1, SMT2 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) AT1G76090 53 / 3e-07 SMT3 sterol methyltransferase 3 (.1) AT1G23360 45 / 5e-05 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT4G33110 45 / 5e-05 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018010 [exp] 982 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031348 [exp] 935 / 0 AT3G18000 843 / 0.0 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10009056 [exp] 847 / 0 AT1G73600 773 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009537 [exp] 73 / 1e-13 AT1G64970 453 / 3e-160 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10020357 [exp] 72 / 1e-13 AT1G64970 434 / 7e-154 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Lus10022684 [exp] 58 / 9e-09 AT4G33110 516 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10023995 [exp] 56 / 3e-08 AT1G20330 459 / 9e-164 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10005625 [exp] 56 / 4e-08 AT1G20330 582 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Lus10029124 [exp] 51 / 7e-07 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047400 [exp] 878 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.015G039000 [exp] 871 / 0 AT1G48600 862 / 0.0 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.012G047301 [exp] 211 / 1e-66 AT1G48600 213 / 8e-68 phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.001G263700 [exp] 83 / 3e-17 AT5G13710 587 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.013G077000 [exp] 75 / 2e-14 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.009G058600 [exp] 74 / 4e-14 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.005G245800 [exp] 63 / 1e-10 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.016G056000 [exp] 61 / 6e-10 AT5G13710 513 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.002G016300 [exp] 60 / 1e-09 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.019G089700 [exp] 49 / 4e-06 AT3G18000 53 / 2e-07 XIPOTL 1, N-METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10042006 pacid=23153735 polypeptide=Lus10042006 locus=Lus10042006.g ID=Lus10042006.BGIv1.0 annot-version=v1.0 ATGGCGGATAACGGTGCAGCACCTGTGGTGGAACGTGAGATTCAGAAGAACTACTGGACGGAGCACTCCGTTGATCTGACGGTGGAGTCGATGATGCTCG ACTCCAAAGCCTCTGATCTCGACAAAGAAGAACGGCCTGAGGTACTCTCTCTGCTCCCACCGTATGAGGGGAAATCTGTGTTGGAACTTGGAGCTGGTAT TGGTCGGTTCACTGGAGAAATAGCGAAGAAGGCTGGCCAAGTTATAGCTTTGGATTTCATTGAGAGCGTGATTAAGAAGAATGAGAACGTTAATGGACAC TTTGACAATGTCAAGTTCATGTGCGCTGACGTGACATCCCCAGATCTGAACGTTTCAGAAGGATCCATTGATTTGATTTTCTCCAACTGGCTTCTTATGT ATCTTTCAGATACTGAGGTAGAAAAGCTCGCTGAAAGAATGATGAAATGGTTGAAGGTTGGTGGGTGTATTTTCTTTAGAGAGTCATGCTTCCATCAATC TGGAGATAGCAAAAGGAAATACAACCCCACTCACTACCGGGAACCAAGCTTCTATACAAAGGTCTTTATGGGTTCCCATATGCATGATGATTCTGGAAAC CAATATGAGCTCTCTTTTATTGGCTGCAAATGCATTGGAGCTTATGTGAGGAGCAAAAAGAACCAAAATCAGATTTGTTGGACATGGCAGAAAGTTCGTT CCCAGGATGACAAAGGATTTCAGCAGTTCCTGGACAATGTTCAGTACAAATCCAGTGGAATTCTGCGTTACGAACGTGTATTTGGGCAAGGCTATGTGAG CACTGGGGGAATAGAAACAACAAAGGAGTTTGTGGGGAAGCTGGATCTGAAACCTGGCCAGAAGGTCCTCGATGTTGGCTGTGGTATTGGTGGGGGCGAC TTCTACATGGCTGAGAATTTTGACGTTGAGGTGGTTGGCATTGACCTCTCGATAAACATGATTTCTATCGCTCTGGAGCGTGCCATTGGACTAAAATGCA CAGTTGAATTCGAGGTTGCCGATTGCACCATGAAAACTTATCCAGATAACTCATTTGATGTTATCTACAGTCGTGATACCATTCTCCATATTCAGGACAA GCCATCCTTGTTCAGATCATTCTACAAGTGGCTGAAACCTGGAGGTAGAGTTCTCATCAGTGATTACTGCAGGAGTGCTGGAACTCCATCCGAAGAATTT GCGGAGTATATTAAGCAGAGAGGATACGATCTTCACAATGTGAAGGCATACAGCCAGATGCTCAGAGATGCTGGTTTCCAGGAGATCATAGCTGAGGACC GTACTAATCAGTTCAACCAAGTTCTGAAGAGGGAGCTGGATGCTATAGAGAAAGAGAAAGATACATTCATCCACGACTTCTCCCAAGAGGACTACAACGA CATAGTAGGAGGATGGAAGTCGAAGCTGGTCAGGAGCTCGTCCGGTGAACAGAAATGGGGCCTCTTTATTGCCAAGAAGTAA
AA sequence Show only first row Show all	>Lus10042006 pacid=23153735 polypeptide=Lus10042006 locus=Lus10042006.g ID=Lus10042006.BGIv1.0 annot-version=v1.0 MADNGAAPVVEREIQKNYWTEHSVDLTVESMMLDSKASDLDKEERPEVLSLLPPYEGKSVLELGAGIGRFTGEIAKKAGQVIALDFIESVIKKNENVNGH FDNVKFMCADVTSPDLNVSEGSIDLIFSNWLLMYLSDTEVEKLAERMMKWLKVGGCIFFRESCFHQSGDSKRKYNPTHYREPSFYTKVFMGSHMHDDSGN QYELSFIGCKCIGAYVRSKKNQNQICWTWQKVRSQDDKGFQQFLDNVQYKSSGILRYERVFGQGYVSTGGIETTKEFVGKLDLKPGQKVLDVGCGIGGGD FYMAENFDVEVVGIDLSINMISIALERAIGLKCTVEFEVADCTMKTYPDNSFDVIYSRDTILHIQDKPSLFRSFYKWLKPGGRVLISDYCRSAGTPSEEF AEYIKQRGYDLHNVKAYSQMLRDAGFQEIIAEDRTNQFNQVLKRELDAIEKEKDTFIHDFSQEDYNDIVGGWKSKLVRSSSGEQKWGLFIAKK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10042006 [exp]	0	1
AT3G18000		XPL1, NMT1, XIP...	XIPOTL 1, N-METHYLTRANSFERASE ...		Lus10018010 [exp]	1.0	0.9264
AT2G38840			Guanylate-binding family prote...		Lus10024841 [exp]	3.0	0.8162
AT2G36390		SBE2.1, BE3	BRANCHING ENZYME 3, starch bra...		Lus10023878 [exp]	7.7	0.7117
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Lus10003526 [exp]	7.9	0.8273
AT5G52560		ATUSP	UDP-sugar pyrophosphorylase (....		Lus10000971 [exp]	13.4	0.7406
AT1G50120			unknown protein		Lus10013430 [exp]	13.5	0.7451
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Lus10010365 [exp]	14.2	0.7139
AT3G62060			Pectinacetylesterase family pr...		Lus10007200 [exp]	14.7	0.7563
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10040349 [exp]	15.1	0.7292
AT2G16405			Transducin/WD40 repeat-like su...		Lus10028800 [exp]	17.3	0.7688

Compare expression of checked genes

Lus10042006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.