Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18010 155 / 3e-43 HD WOX1 WUSCHEL related homeobox 1 (.1) AT2G28610 107 / 1e-26 HD PRS1, PRS, WOX3 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) AT1G46480 104 / 1e-25 HD WOX4 WUSCHEL related homeobox 4 (.1) AT3G11260 102 / 2e-25 HD WOX5B, WOX5 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) AT5G59340 104 / 3e-25 HD WOX2 WUSCHEL related homeobox 2 (.1) AT2G17950 104 / 5e-25 HD WUS1, PGA6, WUS WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) AT2G01500 102 / 1e-24 HD WOX6, PFS2, HOS9 WUSCHEL RELATED HOMEOBOX 6, PRETTY FEW SEEDS 2, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 9, Homeodomain-like superfamily protein (.1) AT5G05770 96 / 7e-24 HD WOX5A, WOX7 WUSCHEL related homeobox 5A, WUSCHEL related homeobox 7 (.1) AT5G45980 77 / 2e-15 HD WOX9B, STPL, WOX8 WUSCHEL related homeobox 9B, STIMPY-LIKE, WUSCHEL related homeobox 8 (.1) AT2G33880 75 / 1e-14 HD WOX9A, STIP, WOX9, HB-3 WUSCHEL related homeobox 9A, WUSCHEL-RELATED HOMEOBOX 9, STIMPY, homeobox-3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018011 [exp] 573 / 0 AT3G18010 164 / 9e-47 WUSCHEL related homeobox 1 (.1) Lus10028271 [exp] 110 / 1e-27 AT3G11260 177 / 4e-56 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10024808 [exp] 109 / 5e-27 AT1G46480 195 / 7e-62 WUSCHEL related homeobox 4 (.1) Lus10040219 [exp] 107 / 2e-26 AT3G11260 179 / 4e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Lus10038480 [exp] 101 / 7e-25 AT2G28610 130 / 1e-37 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10041909 [exp] 102 / 9e-24 AT2G17950 145 / 4e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10028457 [exp] 100 / 4e-23 AT2G17950 146 / 3e-41 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Lus10023332 [exp] 89 / 3e-21 AT2G28610 109 / 9e-31 WUSCHEL RELATED HOMEOBOX 3, PRESSED FLOWER 1, PRESSED FLOWER, Homeodomain-like superfamily protein (.1) Lus10016569 [exp] 92 / 8e-21 AT5G59340 121 / 6e-33 WUSCHEL related homeobox 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039100 [exp] 170 / 2e-48 AT3G18010 195 / 3e-59 WUSCHEL related homeobox 1 (.1) Potri.012G047700 [exp] 160 / 7e-45 AT3G18010 174 / 8e-51 WUSCHEL related homeobox 1 (.1) Potri.014G025300 [exp] 106 / 1e-26 AT1G46480 226 / 5e-75 WUSCHEL related homeobox 4 (.1) Potri.002G124100 [exp] 105 / 2e-26 AT1G46480 221 / 1e-72 WUSCHEL related homeobox 4 (.1) Potri.010G192100 [exp] 103 / 8e-26 AT3G11260 159 / 1e-49 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.010G111400 [exp] 106 / 1e-25 AT3G18010 109 / 2e-27 WUSCHEL related homeobox 1 (.1) Potri.008G065400 [exp] 100 / 9e-25 AT3G11260 176 / 9e-57 WUSCHEL related homeobox 5B, WUSCHEL related homeobox 5 (.1) Potri.007G012100 [exp] 101 / 3e-24 AT2G17950 126 / 9e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.005G114700 [exp] 100 / 1e-23 AT2G17950 129 / 1e-35 WUSCHEL 1, WUSCHEL, Homeodomain-like superfamily protein (.1) Potri.009G029200 [exp] 97 / 7e-23 AT5G59340 171 / 2e-52 WUSCHEL related homeobox 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00046 [flax] [poplar] Homeodomain Homeodomain
Representative CDS sequence Show only first row Show all	>Lus10042007 pacid=23153607 polypeptide=Lus10042007 locus=Lus10042007.g ID=Lus10042007.BGIv1.0 annot-version=v1.0 ATGTGGATGATGGGTTACAACGATGCTGGAAATGGCTACGCTGTTCCTCATGATCATTATCAGTTCAACAATGGGAGTCGGAAGCTGAGACCTTTAATTC CTCGTTCTTTTCTGTCGTCTACTCCGACGACGGCGACAGCAGCGGCGAGCATCCTCGTTCCCGGTTCTGTAACTGCCAATTCTGACCACCACCACCTCTC AGCTTTCAATCACCATAACCACCATCTGGGAAGTACAACGACCGCAGAACAGAGCAAACGAGACAATATTAACAATAACATCGACACCTACGAGCTGAAC CAGCTGCAGGGAGTCGGCGGCGCCGGAGTGGTGGTAAGTTCCTCGAGATGGAATCCGACGCCGGAGCAGCTGAGGACGCTGGAGGAGCTTTACCGGCGGG GAACACGCACCCCTTCCGCCGACCAAATCCAGCATATCACAGCTCAGCTCCGCCGCTACGGCAAGATCGAGGGCAAAAACGTCTTTTACTGGTTTCAGAA CCACAAGGCCCGCGAACGCCAGAAGCGCCGCCGCCAGATGGACAGCTCCACGTCATCGCCCGACATCGTCCACCTCCGCTGCCCCGGCGAACCAGTGAAT GGGACAAGTTATGAAGCAGGGGATCAGCAGCAGCAGCAGCAGCAGCTGCAGAACAACAAGAGCTGGGGAGCTATGAACTGCACTGCTTCAGAGGAAGCAA TCCCAATACCATCATGCACAAGAGGAGGAGAGGAAGAAGCATTAGTAGTACTACATGAAGAGGGAAGAAGAAATAACTTCATGGAGGAAAGGAATGCCAC GTGGCAGCACATGATACAGTTGTCTTGTCCACCTCCTCTTACCCCCACCACCACTACTCCAACTACAACAATTACTACTTCCTCTGCCAACATTCATCAT GATGCTTCCAACATCACAACTCCAACATCACCACCACCATCCAGTACCACTGCTGCAACATCCACAGTGAAGCTCATGGTTAATAAGGCATCAGGTCAGC ATCACCATCTCAACATCTTCACTTCCCAATATGGCCTTGTTGCTATAAACCCTACTAGCTACCACCAGCAGCAAATATACTTGCCTCCTCCTCCTCCTAC TACCATTAAGGAACCTGCAGATGGCACACTTGAGCTTTTCCCACTTGGCAGAAGTGGGGGAAATGATGCTGGAAGCAAGAAAGATACTCAAGATCATGGA GATATTGATGATGATGTTAACAAGTTCATCATGGCAACTTCTACTGCTGATAATAACCATCCTAGTAATAATAATAGTTCTTTCCAATTCTTTGAGTTTC TCCCACTGAAGAACTGA
AA sequence Show only first row Show all	>Lus10042007 pacid=23153607 polypeptide=Lus10042007 locus=Lus10042007.g ID=Lus10042007.BGIv1.0 annot-version=v1.0 MWMMGYNDAGNGYAVPHDHYQFNNGSRKLRPLIPRSFLSSTPTTATAAASILVPGSVTANSDHHHLSAFNHHNHHLGSTTTAEQSKRDNINNNIDTYELN QLQGVGGAGVVVSSSRWNPTPEQLRTLEELYRRGTRTPSADQIQHITAQLRRYGKIEGKNVFYWFQNHKARERQKRRRQMDSSTSSPDIVHLRCPGEPVN GTSYEAGDQQQQQQQLQNNKSWGAMNCTASEEAIPIPSCTRGGEEEALVVLHEEGRRNNFMEERNATWQHMIQLSCPPPLTPTTTTPTTTITTSSANIHH DASNITTPTSPPPSSTTAATSTVKLMVNKASGQHHHLNIFTSQYGLVAINPTSYHQQQIYLPPPPPTTIKEPADGTLELFPLGRSGGNDAGSKKDTQDHG DIDDDVNKFIMATSTADNNHPSNNNSSFQFFEFLPLKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10042007 [exp]	0	1
AT4G39490		CYP96A10	"cytochrome P450, family 96, s...		Lus10002525 [exp]	1.0	0.9849
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10031608 [exp]	1.4	0.9796
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Lus10010361 [exp]	1.7	0.9782
AT3G49950	GRAS		GRAS family transcription fact...		Lus10039709 [exp]	3.5	0.9681
AT3G18010	HD	WOX1	WUSCHEL related homeobox 1 (.1...		Lus10018011 [exp]	3.9	0.9632
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Lus10043361 [exp]	6.8	0.8882
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Lus10011092 [exp]	6.8	0.9175
AT5G03790	HD	LMI1, ATHB51	LATE MERISTEM IDENTITY1, homeo...		Lus10008641 [exp]	7.1	0.9352
AT2G32350			Ubiquitin-like superfamily pro...		Lus10039679 [exp]	7.3	0.9347
AT1G67040			unknown protein		Lus10017607 [exp]	7.4	0.9454

Compare expression of checked genes

Lus10042007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.