Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2) AT1G73630 138 / 2e-42 EF hand calcium-binding protein family (.1) AT1G24620 90 / 3e-23 EF hand calcium-binding protein family (.1) AT1G66400 86 / 5e-22 CML23 calmodulin like 23 (.1) AT5G37770 79 / 1e-19 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G05990 77 / 7e-19 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G07490 76 / 2e-18 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT3G43810 73 / 4e-17 CAM7 calmodulin 7 (.1) AT2G41110 73 / 4e-17 ACAM-2, ATCAL5, CAM2 calmodulin 2 (.1.2) AT2G27030 73 / 4e-17 CAM5, CAM2, ACAM-2, ACAM-5 calmodulin 5 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018012 [exp] 238 / 5e-82 AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 138 / 3e-42 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 137 / 5e-42 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 91 / 4e-23 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10004330 [exp] 86 / 3e-22 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10028913 [exp] 86 / 4e-22 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1) Lus10009564 [exp] 81 / 6e-20 AT3G07490 233 / 7e-80 calmodulin-like 3, ARF-GAP domain 11 (.1) Lus10014050 [exp] 81 / 1e-19 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10027081 [exp] 80 / 1e-19 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G048200 [exp] 139 / 4e-43 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.015G039500 [exp] 139 / 7e-43 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.017G126200 [exp] 103 / 5e-29 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.004G089400 [exp] 103 / 6e-29 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.010G107100 [exp] 91 / 1e-23 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 91 / 1e-23 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.017G029700 [exp] 82 / 9e-20 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.002G239100 [exp] 80 / 9e-20 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.007G128600 [exp] 77 / 4e-18 AT2G43290 218 / 3e-72 multicopy suppressors of snf4 deficiency in yeast 3, Calcium-binding EF-hand family protein (.1) Potri.012G041000 [exp] 74 / 1e-17 AT5G37780 283 / 9e-100 TOUCH 1, calmodulin 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10042008 pacid=23153565 polypeptide=Lus10042008 locus=Lus10042008.g ID=Lus10042008.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAATCTCAGCCGATGCATCACCGAAACCCACCCCTACGATCACCTCACCGGCCACTGACATCCACAGCACCGACGAGCTCCGAAAAGTGT TCGAGAAGTTCGACACCAACGGCGACGGCAAGATCTCCGCCTCCGAGCTGGCCGGAGTGCTCAGATCTATGGGAACCGAGTACTCCTCTCCGGATCTCCA GCGCGCGATGGAGGAGATCGACTCTGACAAGGACGGTTTCATCAACCTGGAGGAGTTCGCGCAGCTCTGCCGTACGTCGTCGTCAGCTGGAGGAGCCGCG GAGGAGCTCCGGGAGGCGTTCGATCTGTACGACGAGAACAAGGACGGGCTCATCTCGGAGGCGGAGCTCCACCAGGGGAGCTCCACCAGGTGCTCAGCCG CATCGGGATGA
AA sequence Show only first row Show all	>Lus10042008 pacid=23153565 polypeptide=Lus10042008 locus=Lus10042008.g ID=Lus10042008.BGIv1.0 annot-version=v1.0 MAEAISADASPKPTPTITSPATDIHSTDELRKVFEKFDTNGDGKISASELAGVLRSMGTEYSSPDLQRAMEEIDSDKDGFINLEEFAQLCRTSSSAGGAA EELREAFDLYDENKDGLISEAELHQGSSTRCSAASG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18210			Calcium-binding EF-hand family...		Lus10042008 [exp]	0	1
AT1G16560			Per1-like family protein (.1.2...		Lus10027411 [exp]	1.7	0.7695
					Lus10019700 [exp]	4.4	0.8022
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10011847 [exp]	8.8	0.7540
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10005767 [exp]	8.8	0.7847
AT3G60910			S-adenosyl-L-methionine-depend...		Lus10016376 [exp]	10.1	0.6828
AT5G36930			Disease resistance protein (TI...		Lus10029811 [exp]	12.9	0.6681
AT4G23020			unknown protein		Lus10029604 [exp]	14.3	0.7631
AT3G45770			Polyketide synthase, enoylredu...		Lus10020161 [exp]	14.8	0.7623
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	31.8	0.7263
AT1G25550	GARP		myb-like transcription factor ...		Lus10034280 [exp]	33.8	0.6812

Compare expression of checked genes

Lus10042008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.