Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18200 267 / 3e-91 AtRABA6b RAB GTPase homolog A6B (.1) AT1G73640 264 / 8e-90 AtRABA6a RAB GTPase homolog A6A (.1) AT5G59150 226 / 4e-75 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT5G45750 225 / 1e-74 AtRABA1c RAB GTPase homolog A1C (.1) AT3G46830 225 / 1e-74 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT1G16920 224 / 2e-74 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT1G07410 223 / 4e-74 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT5G60860 221 / 3e-73 AtRABA1f RAB GTPase homolog A1F (.1) AT4G18800 220 / 9e-73 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT1G09630 220 / 1e-72 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018013 [exp] 381 / 1e-135 AT1G18200 275 / 9e-94 RAB GTPase homolog A6B (.1) Lus10029253 [exp] 228 / 8e-76 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 227 / 2e-75 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10025432 [exp] 221 / 3e-73 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 221 / 3e-73 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10040745 [exp] 221 / 3e-73 AT1G07410 394 / 7e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10016486 [exp] 221 / 3e-73 AT1G07410 396 / 1e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10015297 [exp] 221 / 7e-73 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 220 / 1e-72 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039700 [exp] 277 / 4e-95 AT1G73640 331 / 2e-116 RAB GTPase homolog A6A (.1) Potri.011G070300 [exp] 227 / 1e-75 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 226 / 4e-75 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.016G000400 [exp] 222 / 2e-73 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.001G374000 [exp] 222 / 2e-73 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.019G092500 [exp] 221 / 2e-73 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.006G000300 [exp] 221 / 4e-73 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 221 / 5e-73 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.003G004100 [exp] 219 / 2e-72 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.011G061300 [exp] 218 / 5e-72 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10042009 pacid=23153530 polypeptide=Lus10042009 locus=Lus10042009.g ID=Lus10042009.BGIv1.0 annot-version=v1.0 ATGGCGGCGGTGACGGTGGACGGGTACGGAGACGAGGAGGAGGAGCAAGAGTGTGACTACCTGTTCAAGGCGGTGATGATCGGCGACTCGGCCGTGGGGA AGACGAACCTGCTGTCGAGATTCTCGAGGAACGAGTTCCGAGTCGACTCTAAGCCGACGATCGGCGTGGAGTTCGCTTACAGAGATGTCAAAGTCGGGAA CAAGCTCATCAAAGCTCAAATCTGGGACACCGCCGGCCAAGAAAGGTTCAGAGCAATAACGAGCTCGTACTATAGGGGAGCCTTGGGTGCACTAGTGGTG TACGACATTTCCCGGCGGGGGACGTTCCACAACGTCGAGAAATGGCTCGACGAGCTCCGTGGCTTCAGCAACTCCGATATGGTAGTCGTCCTCGTTGGCA ACAAGTCCGACGCGGCCCGCCACCTCCGCGAGGTCAGCGAGGAGGACGGCCGGAGTCTCGCGGAAGCGGAAGGGATCTCCTTCATGGAGACCTCCGCCAG GGACGGGGTCAACGTCGACGCTGCTTTCCTTGAGATGATAGCCAAGATCCACCTCCGGAACACCTCCCACCGCTCATTAGACGGCGGCAGCGGCAGAGGG AGGAATTCCTCTGCCGCCGTTGCTCCGGGGGCGCCGCTTCCCCCAGGGGGCACCTCCGGAACACCTCCCACCGCTCATTAG
AA sequence Show only first row Show all	>Lus10042009 pacid=23153530 polypeptide=Lus10042009 locus=Lus10042009.g ID=Lus10042009.BGIv1.0 annot-version=v1.0 MAAVTVDGYGDEEEEQECDYLFKAVMIGDSAVGKTNLLSRFSRNEFRVDSKPTIGVEFAYRDVKVGNKLIKAQIWDTAGQERFRAITSSYYRGALGALVV YDISRRGTFHNVEKWLDELRGFSNSDMVVVLVGNKSDAARHLREVSEEDGRSLAEAEGISFMETSARDGVNVDAAFLEMIAKIHLRNTSHRSLDGGSGRG RNSSAAVAPGAPLPPGGTSGTPPTAH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10042009 [exp]	0	1
AT5G01360		TBL3	TRICHOME BIREFRINGENCE-LIKE 3,...		Lus10027813 [exp]	1.0	0.9827
AT4G35020		ROP6, ARAC3, RH...	RHO-RELATED PROTEIN FROM PLANT...		Lus10039899 [exp]	1.4	0.9826
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10041481 [exp]	1.7	0.9740
AT3G13130			unknown protein		Lus10004415 [exp]	5.3	0.9626
AT1G68200	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10034624 [exp]	5.7	0.9687
					Lus10026494 [exp]	6.5	0.9574
					Lus10024940 [exp]	6.9	0.9454
AT3G46440		UXS5	UDP-XYL synthase 5 (.1.2)		Lus10005900 [exp]	7.1	0.9653
AT2G14740		VSR2;2, BP80-2;...	VACUOLAR SORTING RECEPTOR 3, V...		Lus10002130 [exp]	9.5	0.9600
AT4G35300		TMT2	tonoplast monosaccharide trans...		Lus10013208 [exp]	10.4	0.9437

Compare expression of checked genes

Lus10042009 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.