Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018015 [exp] 154 / 5e-51 ND / Lus10042010 [exp] 93 / 2e-26 ND / Lus10018014 [exp] 81 / 1e-21 ND / Lus10031026 [exp] 66 / 9e-16 ND /
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041301 [exp] 62 / 3e-14 ND / Potri.006G044300 [exp] 61 / 7e-14 ND / Potri.006G044200 [exp] 47 / 2e-08 ND /
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10042011 pacid=23153588 polypeptide=Lus10042011 locus=Lus10042011.g ID=Lus10042011.BGIv1.0 annot-version=v1.0 ATGGCCGGTCTGCAGTACAACTTCTTCCCAACCGACTTCTTCTATCCTCGCCCCACGTCCGTCGCCGGAGCAGCAGAATCGGCCGCCCAGAAATCGTCCC TTCCTCTGCAGGTCCAGAAGTGGCCACACGTCGATCACCACCGCGATGTGAATCACCCCACCGGTTTAGTCCTCCGTACCACCACCAACAAGTTAGTCCC CGCCGTAGAGAATAAGAGGAAGAAGAAATACCATCACCTGGATGGGTAA
AA sequence Show only first row Show all	>Lus10042011 pacid=23153588 polypeptide=Lus10042011 locus=Lus10042011.g ID=Lus10042011.BGIv1.0 annot-version=v1.0 MAGLQYNFFPTDFFYPRPTSVAGAAESAAQKSSLPLQVQKWPHVDHHRDVNHPTGLVLRTTTNKLVPAVENKRKKKYHHLDG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10042011 [exp]	0	1
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10019675 [exp]	1.4	0.9540
					Lus10036557 [exp]	1.7	0.9523
AT1G61800		ATGPT2, GPT2	ARABIDOPSIS GLUCOSE-6-PHOSPHAT...		Lus10007653 [exp]	2.2	0.9421
AT1G49000			unknown protein		Lus10032453 [exp]	2.4	0.9403
AT1G62740		Hop2	Hop2, stress-inducible protein...		Lus10004336 [exp]	3.0	0.9545
AT3G11690			unknown protein		Lus10021243 [exp]	4.7	0.9209
AT5G64510		TIN1	tunicamycin induced 1, unknown...		Lus10020502 [exp]	5.9	0.9392
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10023418 [exp]	7.2	0.9504
AT1G68620			alpha/beta-Hydrolases superfam...		Lus10041473 [exp]	7.5	0.9143
					Lus10041371 [exp]	7.5	0.8988

Compare expression of checked genes

Lus10042011 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.